View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18962_high_6 (Length: 381)

Name: NF18962_high_6
Description: NF18962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18962_high_6
NF18962_high_6
[»] chr1 (1 HSPs)
chr1 (16-362)||(46379067-46379398)


Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 46379398 - 46379067
Alignment:
Q  16 ctcaacacaaaaagaatgatcacataaatcaactacattgtatataggagaaagtagataacctagcttcgtgagttatcataggttaaataattacaga 115  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46379398 ctcaatacaaaaagaatgatcacataaatcaactacattgtatataggagaaagtagataacctagcttcgtgagttatcataggttaaataattacaaa 46379299  T
Q  116 tagggaagaatctcaccgtacctaaattttgatgaagaatctcccccacttggtattc-gtcggaaaactacccttaattttctatgaaggtttaaagaa 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||  ||||||     ||||||  ||||||        ||    
T  46379298 tagggaagaatctcaccgtacctaaattttgatgaagaatctcccccacttggtatttagtcg--aaacta-----aattttg-atgaag--------aa 46379215  T
Q  215 tgtgagagtaagaaacggtcaaggtaaagtaagcgagacaaagatatatacgagattgaagaagttgtgccttctactgccggtattgtaatgttgtagt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46379214 tgtgagagtaagaaacggtcaaggtaaagtaagcgagacaaagatatatacgagattgaagaagttgtgccttctactgccggtattgtaatgttgtagt 46379115  T
Q  315 tttttgaatcattgtttgttacaacgcctctatgcctatggctccaac 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  46379114 tttttgaatcattgtttgttacaacgcctctatgcctatggctccaac 46379067  T

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