View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18962_low_10 (Length: 305)
Name: NF18962_low_10
Description: NF18962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18962_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 50221954 - 50222230
Alignment:
| Q |
12 |
atgaataaatgcttaaggtctttttaatgaaaaactcaactgcatggttgcaactctttcatttgttgaatacaactgaaagttaaagtttcaacaaaat |
111 |
Q |
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| T |
50221954 |
atgaataaatgcttaaggtctttttaatgaaaaactcaactgcatggttgcaactctttcatttgctgaatacaactgaaagttaaagtttcaacaaaat |
50222053 |
T |
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| Q |
112 |
gtaaactcgatgttctagagatgaaaatgatactacgatttgtggtggttatagaagacacaataggactagaaataaatccatttgagagaatgtcgaa |
211 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50222054 |
gtaaactcgatgttctggagatgaaaatgatactacgatttgtggtggttatagaagacacaataggactagaaataaatccatttgagagaaagtcgaa |
50222153 |
T |
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| Q |
212 |
ggtatcttgtattataaaaagatgatagaatctcgtcgtatgtaatttaggtatgtgtaaataaaacaggaataagt |
288 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50222154 |
ggtatattgtattataaaaagatgatagaatctcgtcgtatgtaatttaggtatgtgtaaataaaacatgaataagt |
50222230 |
T |
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