View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18962_low_11 (Length: 304)
Name: NF18962_low_11
Description: NF18962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18962_low_11 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: scaffold0066 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 304
Target Start/End: Original strand, 17785 - 18083
Alignment:
| Q |
6 |
actgagatgaaagaaaatccatgttgcactccataatatgcatgcacctgttacagaaaaaacaccctcaaatgccaaaaatattagaactgctaaagcc |
105 |
Q |
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| T |
17785 |
actgagatgaaagaaaatccatgttgcactaaataatatgcctgtacctgttacagaaaaaacgccctcaaatgccaaaaatattagaactgctaaagcc |
17884 |
T |
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| Q |
106 |
aaagcctccttttcttgccgtcaacttgaactgatttaataataaccacgtttagctccttaaaacacacagcatcataagactccctctgcttccaacc |
205 |
Q |
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| T |
17885 |
aaagcctcctcttcttgctgtcaacttgaactgattgaataataaccacatttagcttcttaaaacaaacagcatcataagactccctctgcttccaacc |
17984 |
T |
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| Q |
206 |
aaaagcgccacaccctatgagaaagtcccctctacagcaggcagaccgaaacaccacagctaggagcagcaagaaagcaccacagacagaccccctcct |
304 |
Q |
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| T |
17985 |
aaaagcaccagaccctatgagaatgtcccctctacagacggccgaccgaaacaccacagccagcagcagcaagaaagcaccatagacacaccccctcct |
18083 |
T |
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Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 48 - 300
Target Start/End: Complemental strand, 7425895 - 7425652
Alignment:
| Q |
48 |
tgcacctgttacagaaaaaacaccctcaaatgccaaaaatattagaactgctaaagccaaagcctccttttcttgccgtcaacttgaactgatttaataa |
147 |
Q |
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|||||||||||||||||| ||| |||||||||||||||| || |||||||||||| | |||| |||| ||| ||||| | ||||||||| |
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| T |
7425895 |
tgcacctgttacagaaaaggcactctcaaatgccaaaaattataaccctgctaaagccatatcctc------ttgctaccaaattgaagtaatttaataa |
7425802 |
T |
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| Q |
148 |
taaccacgtttagctccttaaaacacacagcatcataagactccctctgcttccaaccaaaagcgccacaccctatgagaaagtcccctctacagcaggc |
247 |
Q |
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||||||| || ||||||| | || ||||||| || |||||||||||||||||||| ||||||| | | || || ||||| | |||||| |||||| | |
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| T |
7425801 |
taaccacctt-agctcct--atactcacagcaccacaagactccctctgcttccaaacaaaagctcgagacattaagagaacattccctcttcagcagac |
7425705 |
T |
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| Q |
248 |
agaccgaaacaccacagctaggagcagcaagaaagcaccacagacagaccccc |
300 |
Q |
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||| |||||||||||| || | || ||||||| |||||||||||||||||| |
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| T |
7425704 |
cgacagaaacaccacagtcagcaacaacaagaaaacaccacagacagaccccc |
7425652 |
T |
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