View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18962_low_16 (Length: 227)
Name: NF18962_low_16
Description: NF18962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18962_low_16 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 131; Significance: 4e-68; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 7 - 137
Target Start/End: Original strand, 1238722 - 1238852
Alignment:
| Q |
7 |
cttaccagcttctccactttcctaagctatatgtatgaaaagaaatgatcgaatcttcaaaagaacgttctcaaatatttttagcttagaataaaaaaca |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1238722 |
cttaccagcttctccactttcctaagctatatgtatgaaaagaaatgatcgaatcttcaaaagaacgttctcaaatatttttagcttagaataaaaaaca |
1238821 |
T |
|
| Q |
107 |
tatattctcacaaattgatttgatttgattt |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
1238822 |
tatattctcacaaattgatttgatttgattt |
1238852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 1238851 - 1238885
Alignment:
| Q |
168 |
ttgatcataagctcttaaacaaatatatttatgtt |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1238851 |
ttgatcataagctcttaaacaaatatatttatgtt |
1238885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 1238900 - 1238932
Alignment:
| Q |
195 |
tttatgttcaaagaagagtgaatgaatgaaatc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1238900 |
tttatgttcaaagaagagtgaatgaatgaaatc |
1238932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University