View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18962_low_5 (Length: 392)
Name: NF18962_low_5
Description: NF18962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18962_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 55162453 - 55162074
Alignment:
| Q |
1 |
ctgccttcatgaggctctgtggcataccatttaagctcgttttcaaacactgcagcattgaaccgtttcaaaaaccaattctgatatggtatgttgccaa |
100 |
Q |
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| T |
55162453 |
ctgccttcatgaggctctgtggcataccatttaagctcgttttcaaacactgcagcattgaaccgtttcaaaaaccaattctgatatggtatgttgccaa |
55162354 |
T |
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| Q |
101 |
gaatggtctttgatatcgcagagccaataggaaagtcttttgatatttgctctacaaacacagaagctccttgtaatttctttccattagggtctgatac |
200 |
Q |
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| T |
55162353 |
gaatggtctttgctatcgcagagccaataggaaagtcttttgatatttgctctacaaacacagaagctccttgtaatttccttccattagggtctgatac |
55162254 |
T |
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| Q |
201 |
atgaacggtgacggcacgctttcttttctgtcaaatcagagagacaaaactataattagattcttctatatatcttttaatatataccttacctatgaga |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
55162253 |
atgaacggtgacggcacgctttcttttctgtcaaatcagagagacaaaactataattagattcttctatatatcttttaatatat-----acctatgaga |
55162159 |
T |
|
| Q |
301 |
cacc-----aaattgtttttaatttgaagtgtgagtgctgaagtgaagattagcttggactgactcacagtgttgatgatatatt |
380 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55162158 |
caccaaattaaattgtttttaatttgaagtgtgagtgctgaagtgaagattagcttggactgactcacagtgttgatgatatatt |
55162074 |
T |
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