View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18962_low_7 (Length: 373)
Name: NF18962_low_7
Description: NF18962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18962_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 30687653 - 30687981
Alignment:
| Q |
19 |
gatccaagcatatggctaaccccaagactcaagctctactaaagtaaaggatttaggtgtcaaaaataatttacttacaaagagaaaatgccttcaagga |
118 |
Q |
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| T |
30687653 |
gatccaagcatatggctaaccccaagactcaagctctactaaagtaaaggatttaggtgtcaaaaataatttacttacaaagagaaaatgccttcaagga |
30687752 |
T |
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| Q |
119 |
gaacaatttatgttactactgtattaattataagaacatccgcaactgtcttaaaactatttgattgacaagtaattggattattcggaaggaatgcaac |
218 |
Q |
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| T |
30687753 |
aaacaatttatgttacta-----ttaattataagaacatccgcaactgtcttaaaactatttgattgacaagtaattgaattattcggaaggaatgcaac |
30687847 |
T |
|
| Q |
219 |
tttaggatctttcaaaataaagaatcaactatcattgaaattgttgacatggtgaaattttattcatagtgatggcttaaagtttataaatctcatactt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| ||||||||||||||||||| |
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| T |
30687848 |
tttaggatctttcaaaataaagaatcaactatcattgaaattgttgacaaggtgaaattttattcataatggtggcttaaggtttataaatctcatactt |
30687947 |
T |
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| Q |
319 |
ttgtcgattttcatgtctgatggactaaaccatt |
352 |
Q |
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| T |
30687948 |
ttgtcgattttcatgtctggtggactaaaccatt |
30687981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 154 - 332
Target Start/End: Complemental strand, 39436113 - 39435937
Alignment:
| Q |
154 |
acatccgcaactgtcttaaaactatttgattgacaagtaattggattattcggaaggaatgcaactttaggatctttcaaaataaagaatcaactatcat |
253 |
Q |
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| T |
39436113 |
acatccgcacttgtcttccaactatttggttgacgagtaattggattatttggaaggaacacaactgcaggagctttaaaaacaaaaaatcagctatcat |
39436014 |
T |
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| Q |
254 |
tgaaattgttgacatggtgaaattttattcatagtgatggcttaaagtttataaatctcatacttttgtcgattttcat |
332 |
Q |
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| T |
39436013 |
tgaaattgttaacatggtgaaatttcaatcctggtggtggcttaaggtt--taagcctcatacttttgtcgattttcat |
39435937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 249 - 352
Target Start/End: Original strand, 3092945 - 3093048
Alignment:
| Q |
249 |
atcattgaaattgttgacatggtgaaattttattcatagtgatggcttaaagtttataaatctcatacttttgtcgattttcatgtctgatggactaaac |
348 |
Q |
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| T |
3092945 |
atcactgaaattgttgacagggtgaaaatccattcatgctggtggcttaaggtttataaacctcatacttttgtcgattttcatgtctggcggactaaat |
3093044 |
T |
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| Q |
349 |
catt |
352 |
Q |
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|||| |
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| T |
3093045 |
catt |
3093048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 154 - 307
Target Start/End: Original strand, 47727472 - 47727628
Alignment:
| Q |
154 |
acatccgcaactgtcttaaaactatttgattgacaagtaattggattattcggaaggaatg---caactttaggatctttcaaaataaagaatcaactat |
250 |
Q |
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||||||||| || |||| ||| |||||| || ||||||||||||||||| ||||||| | |||||||||||||||| |||| ||||||| |||| |
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| T |
47727472 |
acatccgcacctctcttcaaattatttggttagcaagtaattggattatttagaaggaaggacacaactttaggatcttttaaaacaaagaatttgctat |
47727571 |
T |
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| Q |
251 |
cattgaaattgttgacatggtgaaattttattcatagtgatggcttaaagtttataa |
307 |
Q |
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| T |
47727572 |
cattgaaattgttgatagggtgaacttccattcatagtggttgcttaaggtttataa |
47727628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 306
Target Start/End: Complemental strand, 43941399 - 43941286
Alignment:
| Q |
194 |
ttggattattcggaaggaatgcaactttaggatctttcaaaataaagaatcaactatcattgaaattgttgacatggtgaaattttatt-catagtgatg |
292 |
Q |
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|||||||||| | |||||| |||| ||| |||||||||||| |||||||| |||||| | |||||||| || |||||||||| ||| ||||||| || |
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| T |
43941399 |
ttggattatttgaaaggaacacaacattaagatctttcaaaacaaagaatcggctatcactaaaattgttaacggggtgaaatttcattacatagtggtg |
43941300 |
T |
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| Q |
293 |
gcttaaagtttata |
306 |
Q |
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|||||| ||||||| |
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| T |
43941299 |
gcttaaggtttata |
43941286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 6376876 - 6376837
Alignment:
| Q |
313 |
atacttttgtcgattttcatgtctgatggactaaaccatt |
352 |
Q |
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|||||||| ||||||||||||||||||||| ||||||||| |
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| T |
6376876 |
atacttttttcgattttcatgtctgatggaataaaccatt |
6376837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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