View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18962_low_8 (Length: 353)
Name: NF18962_low_8
Description: NF18962
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18962_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 122 - 331
Target Start/End: Complemental strand, 32225973 - 32225764
Alignment:
| Q |
122 |
taaatggatcctttgagaagatgtgatattaaattgttaatccattaatgtatgctccagttgagactgcttatgcctaattttcttgagcctatcttca |
221 |
Q |
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| T |
32225973 |
taaatggatcctttgagaagatgtgatattaaattgttaatccattaatgtatgctccagttgagattgcttatgcctaatattcctgagcctatcttca |
32225874 |
T |
|
| Q |
222 |
attaagaatgttaatgactaatattgttacgggacctgtccgtcaatatgtcttttgattacacgtgttatgacattattgatgcattataatgtgctcc |
321 |
Q |
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||| ||| |||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||||| |
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| T |
32225873 |
attgagaccgttaatgactaatattgttatgggacatgtccgtcaatatgttttttgattacacgtgttatgacattgttgatgcattattatatgctcc |
32225774 |
T |
|
| Q |
322 |
agtagcgatt |
331 |
Q |
| |
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| ||| |||| |
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| T |
32225773 |
aatagtgatt |
32225764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 114 - 339
Target Start/End: Complemental strand, 1659702 - 1659476
Alignment:
| Q |
114 |
cctactcgtaaatggatcctttgagaagatgtgatattaaattgttaatccattaatgtatgctccagttgagactgcttatgcctaattttcttgagcc |
213 |
Q |
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||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| |||||| |
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| T |
1659702 |
cctacccgtaaatgaatcctttgagaagatgtgatattaaattgttaatccattaatgtatgctctagttaagactgcttatgcctaatattcgtgagcc |
1659603 |
T |
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| Q |
214 |
tatcttcaattaagaatgttaatgactaatattgttacgggacctgtccgtcaatatgtcttttgattacacgtgttatgacattattgatgca-ttata |
312 |
Q |
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||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||| |
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| T |
1659602 |
tatcttcaattgagaccgttaatgactaatattgttatgggacctgtccgtcaatatgtcttttgattacacgtgttatggcattgttgatgcatttatt |
1659503 |
T |
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| Q |
313 |
atgtgctccagtagcgattacgaatgt |
339 |
Q |
| |
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|| ||||||| ||| |||| ||||||| |
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| T |
1659502 |
atatgctccaatagtgattgcgaatgt |
1659476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 32226418 - 32226312
Alignment:
| Q |
10 |
gattattctatagaatttaaatttctaattcaatacacaacatgaactatttataataagatacaattaactgatgtgttgatattcatcagattttaag |
109 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||| ||||||||||||||||||||| |
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| T |
32226418 |
gattcttctatagaatttaaatttctaattcaatacacaacatgaactatttacaataagatgcaattaagtgttgttatgatattcatcagattttaag |
32226319 |
T |
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| Q |
110 |
gtatcct |
116 |
Q |
| |
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|||||| |
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|
| T |
32226318 |
ttatcct |
32226312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 10 - 116
Target Start/End: Complemental strand, 1660133 - 1660027
Alignment:
| Q |
10 |
gattattctatagaatttaaatttctaattcaatacacaacatgaactatttataataagatacaattaactgatgtgttgatattcatcagattttaag |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || ||| |||||||||||| |||||||| |
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| T |
1660133 |
gattcttctatagaatttaaatttctaattcaatacacaacatgaactatttacaataagatgcaattaagtgttgttatgatattcatcaaattttaag |
1660034 |
T |
|
| Q |
110 |
gtatcct |
116 |
Q |
| |
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|||||| |
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| T |
1660033 |
ttatcct |
1660027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 26450809 - 26450857
Alignment:
| Q |
15 |
ttctatagaatttaaatttctaattcaatacacaacatgaactatttat |
63 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
26450809 |
ttctatagaatttaaatttctaattcaatacacaataggaactatttat |
26450857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 40980556 - 40980508
Alignment:
| Q |
15 |
ttctatagaatttaaatttctaattcaatacacaacatgaactatttat |
63 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | || |||||||| |
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| T |
40980556 |
ttctatagaatttaaatttctaattcaatacacaataggagctatttat |
40980508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 7851787 - 7851835
Alignment:
| Q |
15 |
ttctatagaatttaaatttctaattcaatacacaacatgaactatttat |
63 |
Q |
| |
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||||||||||||||||||||||||| ||| || || | ||||||||||| |
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| T |
7851787 |
ttctatagaatttaaatttctaattaaatgcaaaataggaactatttat |
7851835 |
T |
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