View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18963_high_19 (Length: 369)

Name: NF18963_high_19
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18963_high_19
NF18963_high_19
[»] chr2 (3 HSPs)
chr2 (18-357)||(4242939-4243264)
chr2 (210-331)||(647269-647389)
chr2 (220-357)||(42703923-42704060)
[»] chr5 (7 HSPs)
chr5 (215-355)||(33496284-33496425)
chr5 (210-357)||(42577959-42578106)
chr5 (220-322)||(13093675-13093777)
chr5 (220-322)||(13022151-13022253)
chr5 (243-325)||(23150040-23150122)
chr5 (210-347)||(14277195-14277332)
chr5 (207-337)||(7273756-7273886)
[»] chr1 (9 HSPs)
chr1 (207-347)||(14647356-14647496)
chr1 (207-357)||(12459978-12460128)
chr1 (220-337)||(13189541-13189658)
chr1 (210-347)||(51492973-51493110)
chr1 (218-337)||(20128381-20128500)
chr1 (220-357)||(27644552-27644689)
chr1 (249-323)||(50181614-50181688)
chr1 (257-328)||(27465617-27465688)
chr1 (207-322)||(44138466-44138581)
[»] chr3 (7 HSPs)
chr3 (210-357)||(52966050-52966197)
chr3 (210-347)||(51141345-51141482)
chr3 (246-357)||(2500410-2500521)
chr3 (243-357)||(2332410-2332523)
chr3 (222-303)||(24596131-24596212)
chr3 (247-292)||(4755709-4755754)
chr3 (264-357)||(39695228-39695321)
[»] chr7 (8 HSPs)
chr7 (210-328)||(46598537-46598655)
chr7 (210-328)||(31801220-31801338)
chr7 (210-316)||(512590-512696)
chr7 (243-357)||(12351932-12352046)
chr7 (243-325)||(41146525-41146607)
chr7 (220-322)||(43968796-43968898)
chr7 (207-343)||(18222698-18222834)
chr7 (211-321)||(31402552-31402662)
[»] chr6 (3 HSPs)
chr6 (210-347)||(21731033-21731170)
chr6 (207-357)||(16861976-16862126)
chr6 (246-316)||(10160191-10160261)
[»] scaffold0703 (1 HSPs)
scaffold0703 (207-357)||(870-1020)
[»] chr4 (4 HSPs)
chr4 (210-337)||(54422625-54422752)
chr4 (243-325)||(32498317-32498399)
chr4 (210-287)||(29016903-29016980)
chr4 (241-322)||(43732685-43732766)
[»] chr8 (3 HSPs)
chr8 (246-316)||(9181967-9182037)
chr8 (246-316)||(11626236-11626306)
chr8 (217-316)||(29929639-29929738)
[»] scaffold0007 (1 HSPs)
scaffold0007 (246-328)||(189602-189684)
[»] scaffold0010 (1 HSPs)
scaffold0010 (207-355)||(237888-238036)


Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 4242939 - 4243264
Alignment:
Q  18 aatattggaattaatttaatccatattttaccctgattgaagttgagaggcaatcgaggtatttgtggtactgaggtttgatcttggttttgtgtatatg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4242939 aatattggaattaatttaatccatattttaccctgattgaagttgagaggcaatcgaggtatttgtggtactgaggtttgatcttggttttgtgtatatg 4243038  T
Q  118 tatgtactcctaatatctctcaatgctatctgtaactaatgttacacattttattatcgattttatggctttataagattaaactgagttatttccctag 217  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4243039 tatgtactcctaatatctctcagtgctatctgtaactaatgttacacattttattatcgattttatggctttataagattaaactgagttatttccctag 4243138  T
Q  218 acgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaat 317  Q
    |||||             || |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  4243139 acggg-------------actgattggtcataatccaagctatacatggaggagtctatggagtactcaatctttgctcactttgggtcatagatggaa- 4243224  T
Q  318 attggagatggctcaaaaataaatgtatggaccatgcctt 357  Q
    |||||||||||||| ||||||||| |||||||||||||||    
T  4243225 attggagatggctcgaaaataaatctatggaccatgcctt 4243264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 331
Target Start/End: Original strand, 647269 - 647389
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    ||||||||||| ||||||||||| || ||  | || || || ||| |||| || ||||||||||||||||||||||||| ||| || || |||||  |||    
T  647269 ttccctagacgagatttcttggaggcccctctgggccacaacccaagctacacttggaggagtctatggagtactcaatctttacttacattgggatata 647368  T
Q  310 gatggaatattggagatggctc 331  Q
    ||||||| ||||| ||||||||    
T  647369 gatggaa-attggtgatggctc 647389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 357
Target Start/End: Complemental strand, 42704060 - 42703923
Alignment:
Q  220 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 319  Q
    ||||||||||||| |  || ||||| ||||||||| ||| ||| ||||| ||||| |||||||| ||| | ||||| || |||||||||| || ||| ||    
T  42704060 gggatttcttggaggtccctattggccataatccaagctttacttggagaagtctttggagtacccaacacttgcttacattgggtcatatattgaagat 42703961  T
Q  320 tggagatggctcaaaaataaatgtatggaccatgcctt 357  Q
    ||| |||||  | ||||| ||||| |||| ||||||||    
T  42703960 tggtgatggtgccaaaattaatgtgtggaacatgcctt 42703923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 2e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 33496425 - 33496284
Alignment:
Q  215 tagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa-tatttgctcactttgggtcatagatg 313  Q
    |||| ||||||| ||||| | ||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  33496425 tagatgggatttattggacgaaccgattggtcataatccaagctacacatggaggagtccatggagtactcaaatatttgctcactttgggtcatagatg 33496326  T
Q  314 gaatattggagatggctcaaaaataaatgtatggaccatgcc 355  Q
    ||| |||||||||||||| ||||||||| |||| ||||||||    
T  33496325 gaagattggagatggctcgaaaataaatctatgtaccatgcc 33496284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 210 - 357
Target Start/End: Complemental strand, 42578106 - 42577959
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  42578106 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 42578007  T
Q  310 gatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 357  Q
    ||||||| ||||||||||| ||||| |||||||||||| | |||||||    
T  42578006 gatggaagattggagatggttcaaacataaatgtatggtctatgcctt 42577959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 13093777 - 13093675
Alignment:
Q  220 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 319  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| ||||||| ||||||||| |||||||||| ||    
T  13093777 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacatttgcttactttgggttatagatggaaaat 13093678  T
Q  320 tgg 322  Q
    |||    
T  13093677 tgg 13093675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 322
Target Start/End: Complemental strand, 13022253 - 13022151
Alignment:
Q  220 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 319  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| |||| || ||||||||| |||||||||| ||    
T  13022253 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacattttcttactttgggttatagatggaaaat 13022154  T
Q  320 tgg 322  Q
    |||    
T  13022153 tgg 13022151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 325
Target Start/End: Original strand, 23150040 - 23150122
Alignment:
Q  243 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 325  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  23150040 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 23150122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 14277332 - 14277195
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    |||||| | ||||| ||||||||||  ||  |||||||||||||| |||| |   |||||||||| ||||||||||||| | ||   || ||||||||||    
T  14277332 ttcccttgtcgggacttcttggatgtccctcttggtcataatccaagctacatccggaggagtctttggagtactcaatctctgtatacattgggtcata 14277233  T
Q  310 gatggaatattggagatggctcaaaaataaatgtatgg 347  Q
    ||||||| |||||||  || |||||||||||| |||||    
T  14277232 gatggaagattggaggcggttcaaaaataaatttatgg 14277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 337
Target Start/End: Original strand, 7273756 - 7273886
Alignment:
Q  207 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 306  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| |||| |||||||| || || |||||||| ||| |||| || || |||||||    
T  7273756 tatttcccacgaagggatttcttggatgcctctctcggccataatccaagctacacatggagaagcctttggagtacacaacatttacttaccttgggtc 7273855  T
Q  307 atagatggaatattggagatggctcaaaaat 337  Q
    || ||||||| ||| ||||||| || |||||    
T  7273856 atggatggaagattagagatggttccaaaat 7273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 207 - 347
Target Start/End: Original strand, 14647356 - 14647496
Alignment:
Q  207 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 306  Q
    ||||||||| | ||||| ||||||||||||||  ||| |||||||||| |||| | |||||||||||| ||||||||||||| | |||| || |||||||    
T  14647356 tatttccctcgtcgggacttcttggatgcacctcttgatcataatccaagctacatatggaggagtctttggagtactcaatctctgcttaccttgggtc 14647455  T
Q  307 atagatggaatattggagatggctcaaaaataaatgtatgg 347  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  14647456 atagatggaaaattggagatggttcaaaaataaatgtatgg 14647496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 207 - 357
Target Start/End: Complemental strand, 12460128 - 12459978
Alignment:
Q  207 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 306  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||| ||||  || || || |||||      
T  12460128 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtacccaatcattacttacgttgggct 12460029  T
Q  307 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 357  Q
    |||||||||| |||||  ||||||||||||||||||| ||| | |||||||    
T  12460028 atagatggaagattggtaatggctcaaaaataaatgtgtggtcaatgcctt 12459978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 220 - 337
Target Start/End: Complemental strand, 13189658 - 13189541
Alignment:
Q  220 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 319  Q
    |||| |||||||||||||| ||||| ||||||||| |||| || ||||| ||||| |||||||||||| |||| || || |||||| |||||||||| ||    
T  13189658 gggacttcttggatgcacctattggccataatccaagctacacttggagaagtctttggagtactcaacatttacttaccttgggttatagatggaaaat 13189559  T
Q  320 tggagatggctcaaaaat 337  Q
    |||||||||||| |||||    
T  13189558 tggagatggctctaaaat 13189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 51493110 - 51492973
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    |||||||||  ||||||||||||||| ||  |||| ||||||||| ||||  |||||||| |||| ||||| ||||||| ||| || || ||||||||||    
T  51493110 ttccctagaatggatttcttggatgcccctcttggccataatccaagctacgcatggaggggtctttggagcactcaatctttacttaccttgggtcata 51493011  T
Q  310 gatggaatattggagatggctcaaaaataaatgtatgg 347  Q
    ||||||| ||||||| ||| ||||| ||||||||||||    
T  51493010 gatggaagattggagctggttcaaacataaatgtatgg 51492973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 337
Target Start/End: Original strand, 20128381 - 20128500
Alignment:
Q  218 acgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaat 317  Q
    ||||||||||||||| |||||  |||||||||||||| |||| || |||||||||||||||||||| |||| | | || || ||||| |||||||||||     
T  20128381 acgggatttcttggaagcacctcttggtcataatccaagctacacttggaggagtctatggagtacccaatctcttcttaccttgggacatagatggaag 20128480  T
Q  318 attggagatggctcaaaaat 337  Q
    ||||| |||||| |||||||    
T  20128481 attggtgatggcacaaaaat 20128500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 220 - 357
Target Start/End: Complemental strand, 27644689 - 27644552
Alignment:
Q  220 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 319  Q
    ||||||||||||||||  |  |||||||||||||| ||||||| ||||||||||| |||||||| ||  | ||||| || || || || || ||||| ||    
T  27644689 gggatttcttggatgcctctcttggtcataatccaagctatacttggaggagtctttggagtacccagcacttgcttaccttaggacacaggtggaagat 27644590  T
Q  320 tggagatggctcaaaaataaatgtatggaccatgcctt 357  Q
    |||| |||| || ||||||||||| ||||| |||||||    
T  27644589 tggaaatggttccaaaataaatgtgtggactatgcctt 27644552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 323
Target Start/End: Original strand, 50181614 - 50181688
Alignment:
Q  249 aatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgga 323  Q
    |||||| | |||||||||||||||||||||||||| |||| ||| || || || || ||||||||||| ||||||    
T  50181614 aatccaagttatacatggaggagtctatggagtacgcaatctttacttaccttaggccatagatggaagattgga 50181688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 328
Target Start/End: Original strand, 27465617 - 27465688
Alignment:
Q  257 ctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 328  Q
    |||||| |||| |||||||||||||||||||| ||| || | ||||||||||  |||||| ||||| |||||    
T  27465617 ctatacttggaagagtctatggagtactcaatctttacttattttgggtcatgaatggaaaattggtgatgg 27465688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 322
Target Start/End: Original strand, 44138466 - 44138581
Alignment:
Q  207 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 306  Q
    ||||||||  || |||||||||||||||| ||  | || ||||||||| |||| || ||||| || ||||||||| | ||| |||| || || ||||| |    
T  44138466 tatttcccgcgaagggatttcttggatgcccctctcggccataatccaagctacacctggagaagcctatggagtgcacaacatttacttaccttgggac 44138565  T
Q  307 atagatggaatattgg 322  Q
    |||||||||| |||||    
T  44138566 atagatggaagattgg 44138581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 210 - 357
Target Start/End: Complemental strand, 52966197 - 52966050
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  52966197 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 52966098  T
Q  310 gatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 357  Q
    ||||||| ||||||||||| ||||| |||||||||||| | |||||||    
T  52966097 gatggaagattggagatggttcaaacataaatgtatggtctatgcctt 52966050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 51141482 - 51141345
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    |||||| | ||||| ||||||||||| || ||||||||||||||| | || |||||||| | ||| ||||||||||||||| |||| || ||||||||||    
T  51141482 ttccctcgtcgggacttcttggatgcccctattggtcataatccaagttacacatggagaattctttggagtactcaatatctgcttaccttgggtcata 51141383  T
Q  310 gatggaatattggagatggctcaaaaataaatgtatgg 347  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  51141382 gatggaagattggagatggttcaaaaataaatgtatgg 51141345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 246 - 357
Target Start/End: Complemental strand, 2500521 - 2500410
Alignment:
Q  246 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtat 345  Q
    ||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||| |    
T  2500521 cataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggctctcaaattaatgtgt 2500422  T
Q  346 ggaccatgcctt 357  Q
    |||  |||||||    
T  2500421 ggagtatgcctt 2500410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 357
Target Start/End: Original strand, 2332410 - 2332523
Alignment:
Q  243 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 342  Q
    |||||||||||| ||||||| ||||||||||| ||||||||| || |||| || || |||  | |||||||||| ||||| |||||||| ||||| ||||    
T  2332410 ggtcataatccaagctatacttggaggagtctttggagtact-aacatttacttaccttgtattatagatggaaaattggtgatggctctaaaattaatg 2332508  T
Q  343 tatggaccatgcctt 357  Q
    | ||||  |||||||    
T  2332509 tgtggaaaatgcctt 2332523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 303
Target Start/End: Complemental strand, 24596212 - 24596131
Alignment:
Q  222 gatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgg 303  Q
    |||||||||||||||||  ||||||| |||||| |||| |||||||||||||| |||||| | |||| ||| || |||||||    
T  24596212 gatttcttggatgcaccttttggtcacaatccaagctacacatggaggagtctttggagtgcccaatctttacttactttgg 24596131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Complemental strand, 4755754 - 4755709
Alignment:
Q  247 ataatccatgctatacatggaggagtctatggagtactcaatattt 292  Q
    |||||||| ||||||||||||||||||| |||||||| ||| ||||    
T  4755754 ataatccaagctatacatggaggagtctttggagtacccaaaattt 4755709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 357
Target Start/End: Complemental strand, 39695321 - 39695228
Alignment:
Q  264 tggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 357  Q
    ||||||||||| |||||||||||| | |  || | ||||||||||| |||||| ||||| || ||||| ||||| ||||| || | ||||||||    
T  39695321 tggaggagtctttggagtactcaacaatgacttattttgggtcatatatggaagattggtgacggctctaaaattaatgtgtgaaacatgcctt 39695228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 210 - 328
Target Start/End: Original strand, 46598537 - 46598655
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  46598537 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctggaggagcttatggagtactcaatctttacttactttgggccata 46598636  T
Q  310 gatggaatattggagatgg 328  Q
    ||||||| |||||||||||    
T  46598637 gatggaagattggagatgg 46598655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 210 - 328
Target Start/End: Original strand, 31801220 - 31801338
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    |||||||||| ||| |||||||||||  |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  31801220 ttccctagactggacttcttggatgctaccctcggtcataatccaagctatacttggaggagcttatggagtactcaatctttacttactttgggccata 31801319  T
Q  310 gatggaatattggagatgg 328  Q
    ||||||| |||||||||||    
T  31801320 gatggaagattggagatgg 31801338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 210 - 316
Target Start/End: Original strand, 512590 - 512696
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| || |||||  ||||||||||||||| ||| || |||||||| ||||    
T  512590 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctgaaggagcttatggagtactcaatctttacttactttgggccata 512689  T
Q  310 gatggaa 316  Q
    |||||||    
T  512690 gatggaa 512696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 243 - 357
Target Start/End: Complemental strand, 12352046 - 12351932
Alignment:
Q  243 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 342  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||    
T  12352046 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccatagctggaaaattggagacggctctcaaattaatg 12351947  T
Q  343 tatggaccatgcctt 357  Q
    | ||||  |||||||    
T  12351946 tgtggagtatgcctt 12351932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 325
Target Start/End: Original strand, 41146525 - 41146607
Alignment:
Q  243 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 325  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  41146525 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 41146607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 322
Target Start/End: Original strand, 43968796 - 43968898
Alignment:
Q  220 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 319  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| || |||||||| |||||||||||| ||||||| ||||||||| ||| |||||| ||    
T  43968796 gggatttcttggatgcctccctcggtcataatccaagctttacttgaaggagtctttggagtactcaacatttgcttactttgggttatatatggaaaat 43968895  T
Q  320 tgg 322  Q
    |||    
T  43968896 tgg 43968898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 207 - 343
Target Start/End: Complemental strand, 18222834 - 18222698
Alignment:
Q  207 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 306  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| ||||||| ||||||||||| ||||||| |||||  || || || ||||| |    
T  18222834 tatttcccgcgaagggatttcttggatgcctctctcggccataatccaagctatacttggaggagtctttggagtattcaatcattacttaccttggggc 18222735  T
Q  307 atagatggaatattggagatggctcaaaaataaatgt 343  Q
    |||||||||| |||||||| ||  | |||||||||||    
T  18222734 atagatggaagattggagacggtactaaaataaatgt 18222698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 321
Target Start/End: Original strand, 31402552 - 31402662
Alignment:
Q  211 tccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatag 310  Q
    |||||||| ||||| ||| |||||||   ||||||||||||||| ||| ||||||||||||  | |||||| | ||| |  |  ||||||||||| ||||    
T  31402552 tccctagaagggatatctcggatgcaaatattggtcataatccaagctttacatggaggagcatttggagttcccaaaaccttatcactttgggttatag 31402651  T
Q  311 atggaatattg 321  Q
    |||||| ||||    
T  31402652 atggaagattg 31402662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 21731170 - 21731033
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    |||||| | ||||| ||||||||||||||  |||||||||||||| |||| | |||||||||||| ||||||||||||| | | || || ||||| ||||    
T  21731170 ttccctcgtcgggacttcttggatgcacctcttggtcataatccaagctacatatggaggagtctttggagtactcaatctcttcttaccttgggccata 21731071  T
Q  310 gatggaatattggagatggctcaaaaataaatgtatgg 347  Q
    ||||||| ||| |||| || ||||||||||||||||||    
T  21731070 gatggaaaattagagacggttcaaaaataaatgtatgg 21731033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 207 - 357
Target Start/End: Original strand, 16861976 - 16862126
Alignment:
Q  207 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 306  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| |||| |||||||||||||| |||||||  ||||  || || || |||||      
T  16861976 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctacacatggaggagtctttggagtaaccaatcattacttacgttgggct 16862075  T
Q  307 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 357  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | |||||||    
T  16862076 atagatggaagattggtaatggttcaaatataaatgtgtggccaatgcctt 16862126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 10160261 - 10160191
Alignment:
Q  246 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 316  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  10160261 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 10160191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0703 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 207 - 357
Target Start/End: Complemental strand, 1020 - 870
Alignment:
Q  207 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 306  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||  ||||  || || || |||||      
T  1020 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtatccaatcattacttacgttgggct 921  T
Q  307 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 357  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | |||||||    
T  920 atagatggaagattggtaatggttcaaatataaatgtgtggtcaatgcctt 870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 210 - 337
Target Start/End: Complemental strand, 54422752 - 54422625
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 309  Q
    ||||| || |||||||||||||| ||||   ||||||| |||||| |||| || || ||||||||||||||| | |||| | |||| || ||||| ||||    
T  54422752 ttcccgaggcgggatttcttggaagcacgtcttggtcacaatccaagctacacttgaaggagtctatggagtgcccaatctctgcttaccttggggcata 54422653  T
Q  310 gatggaatattggagatggctcaaaaat 337  Q
    ||||||| || || ||||||||||||||    
T  54422652 gatggaagatcggtgatggctcaaaaat 54422625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 243 - 325
Target Start/End: Original strand, 32498317 - 32498399
Alignment:
Q  243 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 325  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  32498317 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 32498399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 29016903 - 29016980
Alignment:
Q  210 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa 287  Q
    ||||||||| |||||||||||||| | |  |||||||| |||||| ||||||| ||||||||  |||||||| |||||    
T  29016903 ttccctagaagggatttcttggattcccgtattggtcacaatccaagctatacttggaggagcatatggagttctcaa 29016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 43732685 - 43732766
Alignment:
Q  241 ttggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgg 322  Q
    |||||||||||||| |||| || ||||| ||||| |||||| | ||| | ||  | |||||||||||||||||||| |||||    
T  43732685 ttggtcataatccaagctacacttggagaagtctttggagtgcccaacacttagttactttgggtcatagatggaagattgg 43732766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 316
Target Start/End: Complemental strand, 9182037 - 9181967
Alignment:
Q  246 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 316  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  9182037 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 9181967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 316
Target Start/End: Original strand, 11626236 - 11626306
Alignment:
Q  246 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 316  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  11626236 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 11626306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 29929738 - 29929639
Alignment:
Q  217 gacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 316  Q
    |||||||||||||||| |  ||  |||||||||||||| || | || || |||||||| |||||||   || | ||||| ||||||||||||||||||||    
T  29929738 gacgggatttcttggacgaccctcttggtcataatccaagcaacacttgcaggagtctttggagtatctaacacttgcttactttgggtcatagatggaa 29929639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 328
Target Start/End: Complemental strand, 189684 - 189602
Alignment:
Q  246 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 328  Q
    ||||||||| | | ||||||||||||||| | ||||||||||| ||| ||||| ||||| ||||||||||  ||||| |||||    
T  189684 cataatccaagttttacatggaggagtcttttgagtactcaatctttactcaccttgggacatagatggatgattggtgatgg 189602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 355
Target Start/End: Complemental strand, 238036 - 237888
Alignment:
Q  207 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 306  Q
    ||||||||| | |||||||||||||||||    ||||| || |||||| |||  || ||||||||  |||||||| |||||| | | || || |||||      
T  238036 tatttccctcgtcgggatttcttggatgccaatattggccacaatccaagcttcacttggaggagcatatggagttctcaatctcttctaaccttgggct 237937  T
Q  307 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcc 355  Q
    |||||||||| ||||| || || || ||||| ||||| ||| |||||||    
T  237936 atagatggaagattggtgacggttcgaaaatcaatgtttggtccatgcc 237888  T

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