View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_high_27 (Length: 288)
Name: NF18963_high_27
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_high_27 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 3018801 - 3018540
Alignment:
| Q |
10 |
ataatactgtaattcaataattaaatttcatatataaacatgatcaaatctacaatcccatgtttaattgttaagcttttccagttgtacatgtgcactt |
109 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
3018801 |
ataacactgtaattcaataattaaatttcatatataaacatgatcaaatctacaatcccatgtttaattgttaagctattcccgttgtacatgtgcactt |
3018702 |
T |
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| Q |
110 |
tatttaaaccacttaaaaggggaaagaatctctttgacttcataaagattttaactcaccaatggcttactagtatatggtaaaaagtatcattagctaa |
209 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018701 |
tatttaaaccacttaaaaggggaaataatctctttgacttcataaagagtttaactcaccaatggcttactagtatatggtaaaaagtatcattagctaa |
3018602 |
T |
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| Q |
210 |
aacatgagctttagcaagctgccaaagtgctgcttgtgtcccttgctttgatggaagaaaaa |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018601 |
aacatgagctttagcaagctgccaaagtgctgcttgtgtcccttgctttgatggaagaaaaa |
3018540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 271
Target Start/End: Complemental strand, 18362634 - 18362379
Alignment:
| Q |
10 |
ataatactgtaattcaataattaaatttcatatataaacatgatcaaatctacaatcccatgtttaattgttaagcttttccagttgtacatgtgcactt |
109 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
18362634 |
ataacactgtaattcaataattaaatttcatatataaacatgatcaaatctacaatcccatgtttaattgttaaactattccagttgtacatgtgcactt |
18362535 |
T |
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| Q |
110 |
tatttaaaccacttaaaaggggaaagaatctctttgacttcataaagattttaactcaccaatggcttactagtatatggtaaaaagtatcattagctaa |
209 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18362534 |
tatttaaaccacttaaaaggggaaataatctctttgacttcataaag----ta--tcaccaatggcttactagtatatggtaaaaattatcattagctaa |
18362441 |
T |
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| Q |
210 |
aacatgagctttagcaagctgccaaagtgctgcttgtgtcccttgctttgatggaagaaaaa |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362440 |
aacatgagctttagcaagctgccaaagtgctgcttgtgtcccttgctttgatggaagaaaaa |
18362379 |
T |
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