View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18963_high_3 (Length: 688)
Name: NF18963_high_3
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 25348794 - 25348555
Alignment:
| Q |
16 |
tatatatcgtgactcgaatcttgtatgaaggaaatgtataattgacaaaaacgcaagaattggaaacaatgtaataattgcaaataaagaactaagtatt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25348794 |
tatatatcgtgactcgaatcttgtatgaaggaaatatataattgacaaaaacgcaagaattggaaacaatgtaataattgcaaataaagaactaagtatt |
25348695 |
T |
|
| Q |
116 |
aatttagttatttatgttatctactttctacatccttttttctttcttttctgaagtgtaaccaaatggtttatttacttcatgattgagtagttttgat |
215 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25348694 |
aatttagttgtttatgttatctactttctacatccttttttctttcttttctgaagtgtaagcaaatggtttatttacttcatgattgagtagttttgat |
25348595 |
T |
|
| Q |
216 |
ttatgaataaatgagaagatctttgtcgcactaagattag |
255 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25348594 |
ttatgaataaatgagaagatctttgtcgcactaagattag |
25348555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 398 - 681
Target Start/End: Complemental strand, 25342970 - 25342687
Alignment:
| Q |
398 |
ataaaaagaagaaaataggggtgtccattgccacgtgttgggatccaagtcaccatccttcatcaactcgcgtaattctattccacgtcacgcatctcct |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25342970 |
ataaaaagaagaaaataggggtgtccattgccacgtgttgggatccaagtcaccatccttcatcaactcgcgtaattctattccacgtcacgcatctcct |
25342871 |
T |
|
| Q |
498 |
ctcttccttaacggcgaagcaagctgccactgaaggacacaaccgtcattttccataaaaaacctcaagacagctcttcttacaac-ttagt-acgttac |
595 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |
|
|
| T |
25342870 |
ctcttccttaacggcgaagcaagctgccactgaaggacacagccgtcattttccataaaaaacctcaagacagcttttcttacaacgttagtaacgttac |
25342771 |
T |
|
| Q |
596 |
aatatctgtaacttttacttcaatctctatccaaaccaagtcttcagcaaagggtataaccgtaatttactcagagaccgcgtttt |
681 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| ||||||| |||||| |||||||| |||| |||||| || ||||||| |
|
|
| T |
25342770 |
aatatctgtaacttttacttcaa--tctatccaaaccaaatcttcagaaaagggcataaccgtcatttgctcagaaacagcgtttt |
25342687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 25348485 - 25348416
Alignment:
| Q |
252 |
ttaggatgttacatattgagaaatggtttgcatttttgtttacaaacttataaaaatgctatttaatcctt |
322 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25348485 |
ttaggatgt-acatattgagaaatggtttgcatttttgtttacaaacttataaaaatgctatttaatcctt |
25348416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 324 - 375
Target Start/End: Complemental strand, 25348246 - 25348195
Alignment:
| Q |
324 |
tagttgtaaaactctttgagcctacttcatccttctttcaatagagggtatg |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25348246 |
tagttgtaaaactctttgagcctacttcatccttctttcaatagagggtatg |
25348195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 25800974 - 25801030
Alignment:
| Q |
198 |
tgattgagtagttttgatttatgaataaatgagaagatctttgtcgcactaagatta |
254 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||||||| | ||||| ||||| |||| |
|
|
| T |
25800974 |
tgattgagtagttgtgatctttgaataaatgagaagatatgtgtcgtactaaaatta |
25801030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 8e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 45516089 - 45515856
Alignment:
| Q |
16 |
tatatatcgtgactcgaatcttgtatgaaggaaatgtataattgacaaaaacgcaagaattggaaacaatgtaataattgcaaataaagaactaagtatt |
115 |
Q |
| |
|
|||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| |
|
|
| T |
45516089 |
tatatatcatgactcgaatctcgtatgcaggaaatgtataattgacaaaaacgcaagaattggaaacaatgtaacaattgcaaacaaagaagtaagtatt |
45515990 |
T |
|
| Q |
116 |
aatttagttatttatgttatctactttctacatccttttttctttcttttctgaagtgtaaccaaatggtttatttacttcatgattgagtagttttgat |
215 |
Q |
| |
|
|||| ||| ||| || ||||| |||| ||||||||||||||||||| |||||||| ||||||||||||||| || |||||||||||||||||| |
|
|
| T |
45515989 |
aattaagt------tgtattcgactttatacagccttttttctttcttttctaaagtgtaagcaaatggtttatttaattggtgattgagtagttttgat |
45515896 |
T |
|
| Q |
216 |
ttatgaataaatgagaagatctttgtcgcactaagattag |
255 |
Q |
| |
|
||| || ||||||||||||||| |||||||| |||||||| |
|
|
| T |
45515895 |
ttacgagtaaatgagaagatctgtgtcgcacaaagattag |
45515856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 252 - 322
Target Start/End: Complemental strand, 45515786 - 45515716
Alignment:
| Q |
252 |
ttaggatgttacatattgagaaatggtttgcatttttgtttacaaacttataaaaatgctatttaatcctt |
322 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45515786 |
ttaggatgttacatattgagaaatgacttgcatttttgtttacaaacttataaacatgctatttaatcctt |
45515716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University