View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_high_30 (Length: 268)
Name: NF18963_high_30
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 19123742 - 19123506
Alignment:
| Q |
20 |
aaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaatttgtaatagct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123742 |
aaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaatttgtaatagct |
19123643 |
T |
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| Q |
120 |
tcaagaagattcagtgtttcctcctcagtccattcnnnnnnngtctcctcgcttatctccactctcttgaattctgtattactcataccaattcgatagt |
219 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19123642 |
tcaagaagattcagtgtttcctcctcagtccattctttttttgtctcctcgcttatctccactctcttgaattctgtattactcataccaattcgatagt |
19123543 |
T |
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| Q |
220 |
ttccacaaataaaacacctcacacacaacgtcatatt |
256 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
19123542 |
ttccacaaataaaacacctcacacacaacgtcatatt |
19123506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 36753408 - 36753180
Alignment:
| Q |
20 |
aaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaatttgtaatagct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36753408 |
aaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaatttgtaatagct |
36753309 |
T |
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| Q |
120 |
tcaagaagattcagtgtttcctcctcagtccattcnnnnnnngtctcctcgcttatctccactctcttgaattctgtattactcataccaattcgatagt |
219 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
36753308 |
tcaagaagattcagtgtttcctcctcagtccattcattttttgtctcctcacttatctccactctcttaaattttgtattactcataccaattcgatagt |
36753209 |
T |
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| Q |
220 |
ttccacaaataaaacacctcacacacaac |
248 |
Q |
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| |||| ||| ||||||||| |||||||| |
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| T |
36753208 |
tcccacgaatgaaacacctcgcacacaac |
36753180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 256
Target Start/End: Original strand, 54292892 - 54293128
Alignment:
| Q |
20 |
aaaaggaagctctagaaaacgagcaacacattccttgtcggtcctaccaacaacttgatgagaaaccctcttccaatcatccccgaaatttgtaatagct |
119 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| |
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| T |
54292892 |
aaaaggaagctctaaaaaacgagcaacgcattccttgtcggtcctaccaacaacttgatgagcaaccctcttccaatcatcaccgaaattcgtaatagct |
54292991 |
T |
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| Q |
120 |
tcaagaagattcagtgtttcctcctcagtccattcnnnnnnngtctcctcgcttatctccactctcttgaattctgtattactcataccaattcgatagt |
219 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
54292992 |
tcaagaagattcagtgtttccttctcagtccattcatttttcgtctcctcgcttatctccactctcttgaattctgtattactcataccaattcgataat |
54293091 |
T |
|
| Q |
220 |
ttccacaaataaaacacctcacacacaacgtcatatt |
256 |
Q |
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|||||| ||||||||||||| |||||||||||||||| |
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| T |
54293092 |
ttccacgaataaaacacctcgcacacaacgtcatatt |
54293128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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