View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_high_36 (Length: 252)
Name: NF18963_high_36
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 10984329 - 10984571
Alignment:
| Q |
1 |
tggaaatgaaataaagaaaatgaagttataataaacttcattatttaaaattgtctatttagaacatacagaagtaaaaattgaaaaatatgatgctata |
100 |
Q |
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| T |
10984329 |
tggaaatgaaataaagaaaatgaagttataataaacttcattatttaaaattgtctatttggaacatacagaagtaaaaattgaaaaatatgatgctata |
10984428 |
T |
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| Q |
101 |
tatttcaatcaatatatttcacnnnnnnncttcgaaatatatttatctaaccagataactttttaggtcatcagtgtcttttgctattaaccaacaggtt |
200 |
Q |
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| T |
10984429 |
tatttcaatcaatatatttcactttttttcttcgaaatatatttatctaaccagataactttttaggtcatcagtgtcttttgctattaaccaacaggtt |
10984528 |
T |
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| Q |
201 |
catccaataaagatggtgctatgaagccaattcacagaataat |
243 |
Q |
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| T |
10984529 |
catccaataaagatggtgctatgaagccaattcacagaataat |
10984571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 118
Target Start/End: Complemental strand, 11027866 - 11027763
Alignment:
| Q |
16 |
gaaaatgaagttataataaacttcattatttaaaattgtctatttagaacatacagaagtaaaaattgaaaaatatgatgctatatatttc-aatcaata |
114 |
Q |
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| T |
11027866 |
gaaaatgaaattattataaacttgattatttattattttttgtttagaacataacgaagtgaaaattgaaaaatatgatgcgatatatttctaatcaata |
11027767 |
T |
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| Q |
115 |
tatt |
118 |
Q |
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|||| |
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| T |
11027766 |
tatt |
11027763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 10915485 - 10915583
Alignment:
| Q |
16 |
gaaaatgaagttataataaacttcattatttaaaattgtctatttagaacatacagaagtaaaaattgaaaaatatgatgctatatatttcaatcaatat |
115 |
Q |
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||||||||| ||||||||||||||||||||||||| ||| || |||||| | ||||| |||| |||||||| |||||| || ||||| |||||||| |
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| T |
10915485 |
gaaaatgaaattataataaacttcattatttaaaagtgttta--tagaactaaacgaagtgaaaactgaaaaatgtgatgccctaaatttccatcaatat |
10915582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 11033978 - 11034019
Alignment:
| Q |
72 |
aagtaaaaattgaaaaatatgatgctatatatttcaatcaat |
113 |
Q |
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|||| |||| ||||||||||||||||||| |||||||||||| |
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| T |
11033978 |
aagtgaaaactgaaaaatatgatgctatacatttcaatcaat |
11034019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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