View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18963_high_41 (Length: 244)

Name: NF18963_high_41
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18963_high_41
NF18963_high_41
[»] chr8 (5 HSPs)
chr8 (1-134)||(12587192-12587325)
chr8 (1-105)||(27323204-27323308)
chr8 (4-119)||(35036079-35036198)
chr8 (182-222)||(12587373-12587413)
chr8 (101-134)||(27324409-27324442)
[»] chr1 (2 HSPs)
chr1 (1-134)||(21880190-21880323)
chr1 (182-222)||(21880371-21880411)
[»] chr6 (2 HSPs)
chr6 (1-134)||(6901017-6901150)
chr6 (182-222)||(6900741-6900781)
[»] chr3 (2 HSPs)
chr3 (1-134)||(49602742-49602875)
chr3 (182-222)||(49602923-49602963)
[»] chr7 (2 HSPs)
chr7 (1-134)||(22970302-22970435)
chr7 (182-222)||(22970214-22970254)
[»] chr2 (1 HSPs)
chr2 (4-134)||(22329701-22329830)
[»] chr5 (2 HSPs)
chr5 (18-118)||(35360378-35360477)
chr5 (1-38)||(3497361-3497398)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 12587192 - 12587325
Alignment:
Q  1 agcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12587192 agcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaat 12587291  T
Q  101 atcaacaaggtaataatagatgttaactctcatt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  12587292 atcaacaaggtaataatagatgttaactctcatt 12587325  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 27323204 - 27323308
Alignment:
Q  1 agcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaat 100  Q
    ||||||||||||  || |||||| |||||| ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  27323204 agcaataaaataacagcaaagttcaagattattgaataatcctaaataatcatttgtcaaaccctaacaataaagtttacacaatcaacataaattcaat 27323303  T
Q  101 atcaa 105  Q
    |||||    
T  27323304 atcaa 27323308  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 35036198 - 35036079
Alignment:
Q  4 aataaaatagtagtaaagtttaagattgttgaataatcccaaataatcactta----tcaaaccctaacaataaagtttacacaatcaacataaattcaa 99  Q
    ||||||||||| | |||||| | ||| |||||||||||||||| || ||||||    | |||||||||||||||||||||||| ||||||||||||||||    
T  35036198 aataaaatagtggcaaagttcatgatcgttgaataatcccaaaaaaacacttaattattaaaccctaacaataaagtttacactatcaacataaattcaa 35036099  T
Q  100 tatcaacaaggtaataatag 119  Q
    ||||||||| ||||||||||    
T  35036098 tatcaacaaagtaataatag 35036079  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 12587373 - 12587413
Alignment:
Q  182 ggaagagagtgtacctcttagatcaccatgaatggaggaag 222  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12587373 ggaagagagtgtacctcttagatcaccatgaatggaggaag 12587413  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 134
Target Start/End: Original strand, 27324409 - 27324442
Alignment:
Q  101 atcaacaaggtaataatagatgttaactctcatt 134  Q
    ||||||||||| ||||||||||||||||||||||    
T  27324409 atcaacaaggtgataatagatgttaactctcatt 27324442  T

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Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 21880190 - 21880323
Alignment:
Q  1 agcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21880190 agcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaattttacacaatcaacataaattcaat 21880289  T
Q  101 atcaacaaggtaataatagatgttaactctcatt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  21880290 atcaacaaggtaataatagatgttaactctcatt 21880323  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 21880371 - 21880411
Alignment:
Q  182 ggaagagagtgtacctcttagatcaccatgaatggaggaag 222  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  21880371 ggaagagagtgtacctcttagatcaccaccaatggaggaag 21880411  T

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Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 6901150 - 6901017
Alignment:
Q  1 agcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaat 100  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6901150 agcaataaaatagtagtaaagtttaatattgttgaataatcctaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaat 6901051  T
Q  101 atcaacaaggtaataatagatgttaactctcatt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  6901050 atcaacaaggtaataatagatgttaactctcatt 6901017  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 6900781 - 6900741
Alignment:
Q  182 ggaagagagtgtacctcttagatcaccatgaatggaggaag 222  Q
    ||||||||||| ||||||||||||||||  |||||||||||    
T  6900781 ggaagagagtgcacctcttagatcaccaccaatggaggaag 6900741  T

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Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 49602742 - 49602875
Alignment:
Q  1 agcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaat 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  49602742 agcaataaaatagtagtagagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttgtacaatcaacataaattcaat 49602841  T
Q  101 atcaacaaggtaataatagatgttaactctcatt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  49602842 atcaacaaggtaataatagatgttaactctcatt 49602875  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 49602923 - 49602963
Alignment:
Q  182 ggaagagagtgtacctcttagatcaccatgaatggaggaag 222  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  49602923 ggaagagagtgtacctcttagatcaccaccaatggaggaag 49602963  T

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Target: chr7 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 22970435 - 22970302
Alignment:
Q  1 agcaataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||    
T  22970435 agcaataaaatagtagtaaagtttaagattgttgaataatctcaaataatcacttatcaaaccctaacaataaattttttacaatcaacataaattcaat 22970336  T
Q  101 atcaacaaggtaataatagatgttaactctcatt 134  Q
    ||||||||||||||||||||||||||||||||||    
T  22970335 atcaacaaggtaataatagatgttaactctcatt 22970302  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 22970254 - 22970214
Alignment:
Q  182 ggaagagagtgtacctcttagatcaccatgaatggaggaag 222  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  22970254 ggaagagagtgtacctcttagatcaccaccaatggaggaag 22970214  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 4 - 134
Target Start/End: Original strand, 22329701 - 22329830
Alignment:
Q  4 aataaaatagtagtaaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatc 103  Q
    |||||||||| || ||| || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22329701 aataaaatagcagcaaaattcaagattgta-aataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatc 22329799  T
Q  104 aacaaggtaataatagatgttaactctcatt 134  Q
    |||||  ||||||||||||||||||||||||    
T  22329800 aacaacttaataatagatgttaactctcatt 22329830  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 35360378 - 35360477
Alignment:
Q  18 aaagtttaagattgttgaataatcccaaataatcacttatcaaaccctaacaataaagtttacacaatcaacataaattcaatatcaacaaggtaataat 117  Q
    ||||||||| ||||||||||||| |||||||| |||| || |||||||||||||||||||  ||| ||||||| || || ||||||  ||||||||||||    
T  35360378 aaagtttaaaattgttgaataattccaaataaacact-attaaaccctaacaataaagttatcactatcaacaaaagtttaatatcggcaaggtaataat 35360476  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 3497361 - 3497398
Alignment:
Q  1 agcaataaaatagtagtaaagtttaagattgttgaata 38  Q
    |||||||||||||| |||||||| ||||||||||||||    
T  3497361 agcaataaaatagtcgtaaagttcaagattgttgaata 3497398  T

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