View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_high_42 (Length: 243)
Name: NF18963_high_42
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_high_42 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 11025055 - 11025282
Alignment:
| Q |
16 |
ctttcttctcattgtttatgtgtaatacaagcatacaaatgaatgaagggagaaaaataatagaatccacaataatgaactccctcattaaattccaagt |
115 |
Q |
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| T |
11025055 |
ctttcttctcattgtttatgtgtaatacaagcatacaaatgaatgaagggagaaaaataatagaatccacaataatgaactccctcattaaattccaagt |
11025154 |
T |
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| Q |
116 |
tcacccttgtgttaactctatggagtacgcttcactctattcataatggctgccgctatatccaaacaattagtagcaaggtcagaaacaattttagcat |
215 |
Q |
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| T |
11025155 |
tcacccttgtgttaactctatggagtacgcttcactctattcataatggctgccgctatatccaaacaattagtagcaaggtcagaaacaattttagcat |
11025254 |
T |
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| Q |
216 |
cagcagcaaagggtgcaacaggataatc |
243 |
Q |
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| T |
11025255 |
cagcagcaaagggtgcaacaggataatc |
11025282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 102 - 148
Target Start/End: Original strand, 11038389 - 11038435
Alignment:
| Q |
102 |
attaaattccaagttcacccttgtgttaactctatggagtacgcttc |
148 |
Q |
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| T |
11038389 |
attaaattccaagttcacccttgtgttaactctatggagtactcttc |
11038435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 115 - 173
Target Start/End: Complemental strand, 10891908 - 10891850
Alignment:
| Q |
115 |
ttcacccttgtgttaactctatggagtacgcttcactctattcataatggctgccgcta |
173 |
Q |
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| T |
10891908 |
ttcacccatgtgttaactctatggatgaggcttcactctatttataatggctgccgcta |
10891850 |
T |
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