View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_high_6 (Length: 575)
Name: NF18963_high_6
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Original strand, 998302 - 998854
Alignment:
| Q |
18 |
aaacctgtggcagcggcagcacagaccagaagtcaataatgaaatagcgttgtaaatatcgctttgcgatcaatccaggatctatgacaagttcacctct |
117 |
Q |
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| T |
998302 |
aaacctgtggcagcggcagcacagaccagaagtcaataatgaaatagcgttgtaaatatcgctttgcgatcaatccaggatctatgacaagttcacctct |
998401 |
T |
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| Q |
118 |
tccaaatactcgagatgaaggtgcaatgaaggcggtgcggaattggaaacttatgcgaatgagataaataaaatcacatattgttctcaatataacagta |
217 |
Q |
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| T |
998402 |
tccaaatactcgagatgaaggtgcaatgaaggcggtgcggaattggaaacttatgcgaatgagataaataaaatcacatattgttctcaatataacagta |
998501 |
T |
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| Q |
218 |
aacttcgctagatcgttatctatggctaaacaatatgatttgtggttgaaataaggaagatnnnnnnngaaaggatcacaagctacagaaaggatgcata |
317 |
Q |
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| T |
998502 |
aacttcgctagattgttatctatggctaaacaatatgatttgtggttgaaataaggaagataaaaaaagaaaggatcacaagctacagaaaggatgcata |
998601 |
T |
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| Q |
318 |
gaatctcgaaaaacttgttccaataaagaagattcttatcttgaggatcaaatacttttttctgtgacactttaagatcttctggaaaaactccccaagt |
417 |
Q |
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| T |
998602 |
gaatctcgaaaaacttgttccaataaagaagattcttatcttgaggatcaaatacttttttctgtgacactttaagatcttctggaaaaactccccaagt |
998701 |
T |
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| Q |
418 |
gactccacttttgagtgatcttccaatattcattagtccatctgatccctttttcactccgactcgaaacgatttcgacgaannnnnnnncccgcgaccg |
517 |
Q |
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| T |
998702 |
gactccacttttgagtgatcttccaatattcattagtccatctgatccctttttcactccgactcgaaacgatttcgacgaattttttttcccgcgaccg |
998801 |
T |
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| Q |
518 |
ggaataagaaaaggcaaacaatctaaattaaatcttaacttcttcatctcact |
570 |
Q |
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| T |
998802 |
ggaataagaaaaggcaaacaatctaaattaaatcttaacttcttcatcccact |
998854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 9549838 - 9549874
Alignment:
| Q |
111 |
cacctcttccaaatactcgagatgaaggtgcaatgaa |
147 |
Q |
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| T |
9549838 |
cacctcttccaaatactcgagaagaaggagcaatgaa |
9549874 |
T |
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