View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_1 (Length: 896)
Name: NF18963_low_1
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 798; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 15 - 854
Target Start/End: Original strand, 41737044 - 41737885
Alignment:
| Q |
15 |
acagacaccagacacgacactgacacgttgacacctctcgtaatttgagaaaatgaattaacgattgtatgtgtcggacaccgacactagacatacattt |
114 |
Q |
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| T |
41737044 |
acagacaccagacacgacactgacacgttgacacctctcgtaatttgagaaaatgaattaacgattgtatgtgtcggacaccgacactagacatacattt |
41737143 |
T |
|
| Q |
115 |
gatgaaaattgtcggtgctatggaggtagaaacgtgatttgttcnnnnnnnctttctttctttataaccattgctttttgtacaatttgtgcagagaaag |
214 |
Q |
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| T |
41737144 |
gatgaaaattgtcggtgctatggaggtagaaacgtgatttgttcattttttctttctttctttataaccattgctttatgtacaatttgtgcagagaaag |
41737243 |
T |
|
| Q |
215 |
agtgtttgtgccaaaaacaaagccttacatatcatttataggtagaagaaatctcacagcaagtcctgtgattacttggaacagtaaatcatcagacaga |
314 |
Q |
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| T |
41737244 |
agtgtttgtgccaaaaacaaagccttacatatcatttataggtagaagaaatctcacagcaagtcctgtgattacttggaacagtaaatcatcagacaga |
41737343 |
T |
|
| Q |
315 |
ggtccaaatggtcaagaattgggcacatatggttcagcaactgtagcagttgaatcaaattttttctgtgcaactgagattacttttgaggtaagttaag |
414 |
Q |
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| T |
41737344 |
ggtccaaatggtcaagaattgggcacatatggttcagcaactgtagcagttgaatcaaattttttctgtgcaactgagattacttttgaggtaagttaag |
41737443 |
T |
|
| Q |
415 |
acataatttttggcatagttctaaattgcaattacggttatgttgtgatccttgttattgtggaaaaatgtagcgatacaactagaccgaagaccttggt |
514 |
Q |
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| T |
41737444 |
acataatttttggcatagttctaaattgcaattacggttatgttgtgatccttgttattgcggaaaaatgtagcgatacaactagaccgaagaccttggt |
41737543 |
T |
|
| Q |
515 |
tgatatatgcttgcagactataatttaatatca--ttttgtcacacaatttaagattaataaataagcagttgtaaatttagaagttgatgatctttgta |
612 |
Q |
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| T |
41737544 |
tgatatatgcttgcagactataatttaatatcattttttgtcacacaatttaagattaataaataagcagttgtaaatttagaagttgatgatctttgta |
41737643 |
T |
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| Q |
613 |
tggtggatgcagaatacagtggttgcgtcaccaggtggacgaggaatgcaagcagtggcactaagggtagacagtgatagagcaatgttctataaagtta |
712 |
Q |
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| T |
41737644 |
tggtggatgcagaatacagtggttgcgtcaccaggtggacgaggaatgcaagcagtggcactaagggtagacagtgatagagcaatgttctataaagtta |
41737743 |
T |
|
| Q |
713 |
agattaaaggaacacaagacactctcttggacaacacaggaactcattacttctacaagtgtctcatccaaggaaaagttgatttcatctttggcaatgc |
812 |
Q |
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| T |
41737744 |
agattaaaggaacacaagacactctcttggacaacacaggaactcattacttctacaagtgtctcatccaaggaaaagttgatttcatctttggcaatgc |
41737843 |
T |
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| Q |
813 |
aaaatcactctatgaggtaaagttaaatgatcattttctatg |
854 |
Q |
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| T |
41737844 |
aaaatcactctatgaggtaaagtaaaatgatcattttctatg |
41737885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 42720979 - 42720925
Alignment:
| Q |
14 |
cacagacaccagacacgacactgacacgttgacacctctcgtaatttgagaaaat |
68 |
Q |
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| T |
42720979 |
cacagacatcagacatgacactgacacgttgacaccgctaataatttgaaaaaat |
42720925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 11815809 - 11815854
Alignment:
| Q |
24 |
agacacgacactgacacgttgacacctctcgtaatttgagaaaatg |
69 |
Q |
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| T |
11815809 |
agacacgacactgacacgttgacaccaataataatttgagaaaatg |
11815854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 43328441 - 43328494
Alignment:
| Q |
18 |
gacaccagacacgacactgacacgttgacacctctcgtaatttgagaaaatgaa |
71 |
Q |
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| T |
43328441 |
gacactagacacaacactgacacgttgacacttataataatttgagaaaatgaa |
43328494 |
T |
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