View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_12 (Length: 504)
Name: NF18963_low_12
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 170 - 489
Target Start/End: Complemental strand, 31851956 - 31851638
Alignment:
| Q |
170 |
accgaaagactaaacaaactgaataaaatgatcctgtaagaaatccagatcagctgatgaaatatcaatccaagaccaaacaatgctccacaaaggagca |
269 |
Q |
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| T |
31851956 |
accgaaagactaaacaaactgaacaagatgatcctgtaagaaatccggatcagctgatgaaatatcaacccaagacctaaccatgctccacaaaggagca |
31851857 |
T |
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| Q |
270 |
aaaacggagaaaggaacatgtgatgcgttgtttccaatccaccacggccaatcatgcaaaattgagagtcatttttctcaatccatgatgtatgtttctt |
369 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31851856 |
aaaacggagaaaggaacatgtgatgcgttgtgtccaatccaccgcggccaatcacgcaaaattgagagtcatttt-ctcaatccatgatgtatgtttctt |
31851758 |
T |
|
| Q |
370 |
attaaattaaattaattggtacaaagagaaatactatttgtattgcgcatagaatcaaagctaaaacatctatgatctattataccccacatataggcaa |
469 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31851757 |
attaaattaaattaattggtacaaagagaaatactatttgtattgcgcatagaatcaaagctaaaacatctatgatctattataccccacatataggcaa |
31851658 |
T |
|
| Q |
470 |
tgattataagaagattatac |
489 |
Q |
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|||||||||||||||||||| |
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| T |
31851657 |
tgattataagaagattatac |
31851638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 350 - 453
Target Start/End: Complemental strand, 31853842 - 31853738
Alignment:
| Q |
350 |
atccatgatgtatgtttcttattaaattaaattaa-ttggtacaaagagaaatactatttgtattgcgcatagaatcaaagctaaaacatctatgatcta |
448 |
Q |
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| T |
31853842 |
atccatgttgtatgtttattattaaattaaattaaattgctacaaagagaaatactatttgtattgcgcatagaatcaaagctaaaacatctatgatcta |
31853743 |
T |
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| Q |
449 |
ttata |
453 |
Q |
| |
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||||| |
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| T |
31853742 |
ttata |
31853738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 83 - 155
Target Start/End: Complemental strand, 31853451 - 31853379
Alignment:
| Q |
83 |
ttaagtgtgttttaaatggtgcaactttttctttctttgatttgaacccttgctcaagtagtaattattttga |
155 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31853451 |
ttaattgtgttttaaatggtgcaactttttctttctttgatttgaacccttgctcaagtagtaattattttga |
31853379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 124
Target Start/End: Complemental strand, 31851404 - 31851362
Alignment:
| Q |
83 |
ttaagtgtgttttaaatggtgcaactttttc-tttctttgatt |
124 |
Q |
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| T |
31851404 |
ttaagtgtgttttatatggtgcaactttttcttttctttgatt |
31851362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 459 - 489
Target Start/End: Complemental strand, 31853718 - 31853688
Alignment:
| Q |
459 |
catataggcaatgattataagaagattatac |
489 |
Q |
| |
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| T |
31853718 |
catataggcaatgattataagaagattatac |
31853688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 185 - 341
Target Start/End: Original strand, 18186974 - 18187134
Alignment:
| Q |
185 |
aaactgaataaaatgatcctgtaagaaatccagatcagctgatgaaatatcaatccaagaccaaacaatgctccacaaaggagcaaaaacgg----agaa |
280 |
Q |
| |
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|||||||| || ||||||||||||| ||| | ||| |||||| || ||| |||||||||||| ||| |||||||||||||| || ||||||| |||| |
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| T |
18186974 |
aaactgaacaagatgatcctgtaaggaatacggattagctgaagatataccaatccaagacctaactatgctccacaaaggggcgaaaacggggaaagaa |
18187073 |
T |
|
| Q |
281 |
aggaacatgtgatgcgttgtttccaatccaccacggccaatcatgcaaaattgagagtcat |
341 |
Q |
| |
|
||||||| |||||||||||||||||||||||| | ||| ||| |||||||||||||||| |
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| T |
18187074 |
aggaacaagtgatgcgttgtttccaatccaccgcaaccagtcacacaaaattgagagtcat |
18187134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 185 - 341
Target Start/End: Complemental strand, 24838381 - 24838221
Alignment:
| Q |
185 |
aaactgaataaaatgatcctgtaagaaatccagatcagctgatgaaatatcaatccaagaccaaacaatgctccacaaaggagcaaaaacgg----agaa |
280 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||| || ||| ||||||| |||| ||| |||| ||| ||||| || ||||| | |||| |
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| T |
24838381 |
aaactgaacaagatgatcctgtaacaaatccagatcagctgaagatataccaatccacgacctaaccatgcaccaaaaaggggcgaaaacagggcaagaa |
24838282 |
T |
|
| Q |
281 |
aggaacatgtgatgcgttgtttccaatccaccacggccaatcatgcaaaattgagagtcat |
341 |
Q |
| |
|
| |||| |||||| | | ||||||||||||| | |||| ||| |||||||||||||||| |
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|
| T |
24838281 |
tgaaacaagtgatgtgctatttccaatccaccgcagccagtcacacaaaattgagagtcat |
24838221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 15143161 - 15143292
Alignment:
| Q |
185 |
aaactgaataaaatgatcctgtaagaaatccagatcagctgatgaaatatcaatccaagaccaaacaatgctccacaaaggagcaaaaacgg----agaa |
280 |
Q |
| |
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|||||||| || ||||||||||||| |||| |||||||| || | ||| |||||||||| | | | |||||||||||||| || ||| ||| |||| |
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| T |
15143161 |
aaactgaacaagatgatcctgtaaggaatctggatcagctaataatataccaatccaagatctatccatgctccacaaaggggcgaaagcggggcaagaa |
15143260 |
T |
|
| Q |
281 |
aggaacatgtgatgcgttgtttccaatccacc |
312 |
Q |
| |
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||||||| |||||| |||||||||| |||||| |
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| T |
15143261 |
aggaacaagtgatgtgttgtttccactccacc |
15143292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 9282554 - 9282618
Alignment:
| Q |
277 |
agaaaggaacatgtgatgcgttgtttccaatccaccacggccaatcatgcaaaattgagagtcat |
341 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||| | ||| ||| |||||||||||||||| |
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| T |
9282554 |
agaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcat |
9282618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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