View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18963_low_13 (Length: 479)

Name: NF18963_low_13
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18963_low_13
NF18963_low_13
[»] chr3 (32 HSPs)
chr3 (120-466)||(46491011-46491357)
chr3 (239-354)||(46480210-46480325)
chr3 (18-103)||(46491384-46491469)
chr3 (236-355)||(51944306-51944425)
chr3 (248-339)||(46498380-46498471)
chr3 (244-348)||(46506843-46506952)
chr3 (250-347)||(47413797-47413894)
chr3 (235-355)||(5160693-5160813)
chr3 (251-342)||(46553795-46553886)
chr3 (235-353)||(46474341-46474459)
chr3 (250-342)||(46532342-46532434)
chr3 (393-456)||(5156566-5156629)
chr3 (235-342)||(5156674-5156781)
chr3 (251-342)||(46544913-46545004)
chr3 (235-337)||(46484474-46484576)
chr3 (241-341)||(46236382-46236482)
chr3 (388-456)||(46498266-46498334)
chr3 (285-340)||(46539443-46539498)
chr3 (394-456)||(5160595-5160657)
chr3 (400-466)||(46480098-46480164)
chr3 (267-339)||(46526031-46526103)
chr3 (241-342)||(46535370-46535471)
chr3 (40-100)||(46498700-46498760)
chr3 (273-348)||(16025901-16025976)
chr3 (394-456)||(46526167-46526229)
chr3 (241-339)||(46548602-46548700)
chr3 (411-456)||(46548765-46548810)
chr3 (400-448)||(4581139-4581187)
chr3 (400-448)||(4613596-4613644)
chr3 (285-342)||(4581015-4581072)
chr3 (403-448)||(46236545-46236590)
chr3 (400-448)||(46484366-46484414)
[»] chr4 (4 HSPs)
chr4 (244-348)||(15556432-15556536)
chr4 (251-345)||(35155835-35155929)
chr4 (391-448)||(35162764-35162821)
chr4 (391-448)||(35155744-35155801)
[»] chr7 (7 HSPs)
chr7 (238-340)||(17736950-17737052)
chr7 (240-340)||(17718537-17718637)
chr7 (250-340)||(17699604-17699694)
chr7 (240-340)||(17708713-17708813)
chr7 (240-340)||(17736367-17736467)
chr7 (250-340)||(16722590-16722680)
chr7 (240-331)||(16730588-16730679)
[»] chr8 (5 HSPs)
chr8 (241-352)||(9675300-9675411)
chr8 (241-352)||(9692322-9692433)
chr8 (402-448)||(21463943-21463989)
chr8 (250-339)||(21463785-21463874)
chr8 (400-448)||(9692469-9692517)
[»] chr2 (2 HSPs)
chr2 (241-344)||(20168618-20168721)
chr2 (241-344)||(20359563-20359666)


Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 120 - 466
Target Start/End: Complemental strand, 46491357 - 46491011
Alignment:
Q  120 tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491357 tctatgaggaaacatatggaaaggcaggtaaatcatctacctacattctcattttactaacatcatattgtcaggaaaaataaattccctatttatctat 46491258  T
Q  220 tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaa 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46491257 tggcgagtgtggcacgctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaa 46491158  T
Q  320 agggtggtcagctacaaagtctagtcgagttggaaaacccatgccactgctagtcattacttcagttacggtggctgcaacagcttcggtgccttcttca 419  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  46491157 agggtggccagccacaaagtctagtcgagttggaaaacccatgccactgctagtgaatacttcagttgcggtggctgcaacagcttcggtgccttcttca 46491058  T
Q  420 tttacgtcaataaaagacttgtgaaatattttagaaatacacaggtt 466  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||    
T  46491057 tttacatcaataaaagacttgtgaaatattttagaaatacataggtt 46491011  T

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Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 46480325 - 46480210
Alignment:
Q  239 aaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaag 338  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  46480325 aaatcacccagcaagaggattgagcacctgtccaacaaagatgattgttccggtcaagtcttctctaatcataaataagaaagggtggtcagctacaaag 46480226  T
Q  339 tctagtcgagttggaa 354  Q
    ||||| |||| |||||    
T  46480225 tctagccgaggtggaa 46480210  T

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Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 46491469 - 46491384
Alignment:
Q  18 ggcaggtgttagatatcatgagttgttaaagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactcttcgg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  46491469 ggcaggtgttagatatcatgagttgttaaagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactcatcgg 46491384  T

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Target: chr3; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 51944425 - 51944306
Alignment:
Q  236 ctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctaca 335  Q
    |||| ||||||| | ||| || |||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  51944425 ctaagatcacccggtaagtgggttgagcacctgtccaacaaagatgattgttccagtcaaatcttctctaatcagaaataagaaagggtggtcagctaca 51944326  T
Q  336 aagtctagtcgagttggaaa 355  Q
    ||||||||| ||| ||||||    
T  51944325 aagtctagttgagatggaaa 51944306  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 248 - 339
Target Start/End: Complemental strand, 46498471 - 46498380
Alignment:
Q  248 agcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 339  Q
    |||||||||||||| |||||| |||||||||| ||| ||||| ||||| |||||||| || ||||| ||||| |||||||||||||||||||    
T  46498471 agcaagaggattgagcacctgcccaacaaagacgatagttccggtcaaatcttctctgataataaataagaatgggtggtcagctacaaagt 46498380  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 244 - 348
Target Start/End: Original strand, 46506843 - 46506952
Alignment:
Q  244 acccagcaagaggattgaacacctgtccaacaaa-----gatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaag 338  Q
    |||||||||||||||||| |||||||||||||||     || ||||||||| ||| | |||||| |||| | ||| ||||| ||||||||||||||||||    
T  46506843 acccagcaagaggattgagcacctgtccaacaaattaaagaggattgttccggtccaatcttctttaattagaaataagaatgggtggtcagctacaaag 46506942  T
Q  339 tctagtcgag 348  Q
    ||||||||||    
T  46506943 tctagtcgag 46506952  T

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Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 250 - 347
Target Start/End: Original strand, 47413797 - 47413894
Alignment:
Q  250 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcga 347  Q
    |||||||||||| ||| ||||||||||||| ||||||| | ||  | ||||||||||| | ||| |||||||||||||| ||||||||||||||||||    
T  47413797 caagaggattgagcacatgtccaacaaagaggattgtttcggttgaatcttctctaattagaaataagaaagggtggtcggctacaaagtctagtcga 47413894  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 235 - 355
Target Start/End: Complemental strand, 5160813 - 5160693
Alignment:
Q  235 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 334  Q
    ||||| ||||| || ||||||||||||  || |||||||||||||  || ||||||||| | ||||||||||||| ||| ||||||||||||||||||||    
T  5160813 gctaagatcactcatcaagaggattgagtacttgtccaacaaagagaatggttccagtccaatcttctctaatcagaaataagaaagggtggtcagctac 5160714  T
Q  335 aaagtctagtcgagttggaaa 355  Q
     || || ||  ||||||||||    
T  5160713 gaaatcaagctgagttggaaa 5160693  T

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Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 251 - 342
Target Start/End: Original strand, 46553795 - 46553886
Alignment:
Q  251 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 342  Q
    |||||||||||  || || ||||||||||  ||||| |||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  46553795 aagaggattgagaacttggccaacaaagagtattgtaccagacaaatcttctctaataaaaaacaagaaagggtggtcagctacaaagtcta 46553886  T

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Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 353
Target Start/End: Complemental strand, 46474459 - 46474341
Alignment:
Q  235 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 334  Q
    ||||| |||||||| |||||||||| | ||||||||||||||||||||||||||| | ||| || |||||||| | | | ||||| ||||| ||| ||||    
T  46474459 gctaagatcacccatcaagaggattaagcacctgtccaacaaagatgattgttccggccaaatcatctctaattagatataagaatgggtgatcaactac 46474360  T
Q  335 aaagtctagtcgagttgga 353  Q
    ||| || | ||||||||||    
T  46474359 aaaatccattcgagttgga 46474341  T

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Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 250 - 342
Target Start/End: Complemental strand, 46532434 - 46532342
Alignment:
Q  250 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 342  Q
    |||||||||||| ||| || ||||||||||  ||||| |||| ||| || ||||| |||| ||||| ||||||||||||||||||||||||||    
T  46532434 caagaggattgagcacttggccaacaaagagtattgtaccagacaaatcgtctcttatcaaaaacatgaaagggtggtcagctacaaagtcta 46532342  T

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Target: chr3; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 393 - 456
Target Start/End: Complemental strand, 5156629 - 5156566
Alignment:
Q  393 gctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 456  Q
    |||||| ||||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  5156629 gctgcagcagcttcagtgccttcttcatttacttcaatgaaagatttgtgaaatattttagaaa 5156566  T

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Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 235 - 342
Target Start/End: Complemental strand, 5156781 - 5156674
Alignment:
Q  235 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 334  Q
    ||||| ||||| || |||| ||||||| ||| |||||||||||||  || ||||||||| | | ||||||||| | ||| ||||||||||| ||||||||    
T  5156781 gctaagatcactcatcaagtggattgagcacttgtccaacaaagagaatggttccagtcgagttttctctaattagaaataagaaagggtgatcagctac 5156682  T
Q  335 aaagtcta 342  Q
    ||||||||    
T  5156681 aaagtcta 5156674  T

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Target: chr3; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 251 - 342
Target Start/End: Complemental strand, 46545004 - 46544913
Alignment:
Q  251 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 342  Q
    |||||||||||  || ||||||| |||||  |  ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  46545004 aagaggattgagaacttgtccaataaagagtaccgttccagacaaatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtcta 46544913  T

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Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 235 - 337
Target Start/End: Complemental strand, 46484576 - 46484474
Alignment:
Q  235 gctaaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctac 334  Q
    ||||| |||||||| ||||| |||| | ||| ||||||||||||||||||||||||| ||| || |||||||| | | | ||||| ||||| ||||||||    
T  46484576 gctaagatcacccatcaagatgattaagcacatgtccaacaaagatgattgttccagccaaatcatctctaattagatataagaatgggtgatcagctac 46484477  T
Q  335 aaa 337  Q
    |||    
T  46484476 aaa 46484474  T

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Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 46236382 - 46236482
Alignment:
Q  241 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 340  Q
    |||| ||| ||| |||||||| |||||||||| |||||| ||||||||| ||| |  |||||||||| | ||| | ||||||||| ||||||||||||||    
T  46236382 atcatccaacaacaggattgagcacctgtccagcaaagaggattgttccggtcgaaacttctctaattagaaataggaaagggtgatcagctacaaagtc 46236481  T
Q  341 t 341  Q
    |    
T  46236482 t 46236482  T

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Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 456
Target Start/End: Complemental strand, 46498334 - 46498266
Alignment:
Q  388 cggtggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 456  Q
    ||||||| ||| |||||| |||||||||||||||||| ||||| ||||||||||| |||||||| ||||    
T  46498334 cggtggccgcagcagctttggtgccttcttcatttacttcaatgaaagacttgtggaatattttggaaa 46498266  T

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Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 340
Target Start/End: Complemental strand, 46539498 - 46539443
Alignment:
Q  285 gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 340  Q
    ||||||| ||| |||||||| |||| ||||||||||||||||||||||||||||||    
T  46539498 gttccagacaaatcttctctgatcaaaaacaagaaagggtggtcagctacaaagtc 46539443  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 456
Target Start/End: Complemental strand, 5160657 - 5160595
Alignment:
Q  394 ctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 456  Q
    ||||||||||||| |  |||||||||||||| ||||| ||||| |||||||||||||||||||    
T  5160657 ctgcaacagcttcagcaccttcttcatttacttcaatgaaagatttgtgaaatattttagaaa 5160595  T

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Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 400 - 466
Target Start/End: Complemental strand, 46480164 - 46480098
Alignment:
Q  400 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaatacacaggtt 466  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||| ||| |||||    
T  46480164 cagcttcagtgccttcttcatttacttcaatgaaagacttgtgaaatatattggaaacacaaaggtt 46480098  T

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Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 46526031 - 46526103
Alignment:
Q  267 tgtccaacaaagatgatt-gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 339  Q
    ||||||||||||| |||| ||||||||||| ||||||||||| | |||||||||| ||||||| ||||||||||    
T  46526031 tgtccaacaaagaggatttgttccagtcaaatcttctctaattagaaacaagaaa-ggtggtctgctacaaagt 46526103  T

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Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 46535471 - 46535370
Alignment:
Q  241 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 340  Q
    |||| ||||||||||||||   ||| || |||||||||   ||||| ||||  || |||||||| |||| |||||||||||| |||||||||||||||||    
T  46535471 atcatccagcaagaggattatgcacttgcccaacaaagtgtattgtaccagataaatcttctcttatcaaaaacaagaaaggatggtcagctacaaagtc 46535372  T
Q  341 ta 342  Q
    ||    
T  46535371 ta 46535370  T

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Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 46498760 - 46498700
Alignment:
Q  40 ttgttaaagaaattaaaggaagtctaccaaaatttattaaaatacacaagtatgaactctt 100  Q
    ||||||||||||||| |||||||||  ||||| ||||||| |||||||| |||||||||||    
T  46498760 ttgttaaagaaattagaggaagtctgtcaaaaattattaacatacacaattatgaactctt 46498700  T

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Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 16025976 - 16025901
Alignment:
Q  273 acaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtcgag 348  Q
    ||||||| ||||||| | || || ||||||||||| | ||| ||||||||||||||||||||||| |||| |||||    
T  16025976 acaaagaggattgtttcggttaaatcttctctaattagaaataagaaagggtggtcagctacaaaatctactcgag 16025901  T

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Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 456
Target Start/End: Original strand, 46526167 - 46526229
Alignment:
Q  394 ctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 456  Q
    ||||| |||||||||||||| | |||||||| ||||| | |||||||||||||||||| ||||    
T  46526167 ctgcagcagcttcggtgcctccctcatttacttcaatgagagacttgtgaaatattttggaaa 46526229  T

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Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 339
Target Start/End: Original strand, 46548602 - 46548700
Alignment:
Q  241 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 339  Q
    |||||||| ||| |||||||| ||| ||||||| |||||  || |||||||   | |||||| | |||||||||| |||||| ||||||||||||||||    
T  46548602 atcacccaacaaaaggattgagcacttgtccaataaagagtatagttccagaagaatcttctttgatcataaacatgaaaggatggtcagctacaaagt 46548700  T

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Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 456
Target Start/End: Original strand, 46548765 - 46548810
Alignment:
Q  411 ccttcttcatttacgtcaataaaagacttgtgaaatattttagaaa 456  Q
    |||||||| ||||| ||||| |||||||||||||||||||||||||    
T  46548765 ccttcttcttttacttcaatgaaagacttgtgaaatattttagaaa 46548810  T

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Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 4581139 - 4581187
Alignment:
Q  400 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 448  Q
    ||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  4581139 cagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatat 4581187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 4613596 - 4613644
Alignment:
Q  400 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 448  Q
    ||||||| || ||| |||||||||| |||||||||||||||||||||||    
T  4613596 cagcttcagtacctgcttcatttacttcaataaaagacttgtgaaatat 4613644  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 4581015 - 4581072
Alignment:
Q  285 gttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtcta 342  Q
    ||||||| ||| |||||||  |||| ||||||||||||||||||||| ||||| ||||    
T  4581015 gttccagacaaatcttctcggatcaaaaacaagaaagggtggtcagccacaaattcta 4581072  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 46236545 - 46236590
Alignment:
Q  403 cttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 448  Q
    |||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  46236545 cttcagtgccttcttcatttacttcaatgaaagatttgtgaaatat 46236590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 448
Target Start/End: Complemental strand, 46484414 - 46484366
Alignment:
Q  400 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 448  Q
    ||||||| ||||||||||||||||| ||||| ||||| ||||| |||||    
T  46484414 cagcttcagtgccttcttcatttacttcaatgaaagatttgtgcaatat 46484366  T

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Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 244 - 348
Target Start/End: Complemental strand, 15556536 - 15556432
Alignment:
Q  244 acccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctag 343  Q
    ||||||||| |||||| | ||||||||||||||||| |||||| || ||||| |||||||| || | ||| ||||| |||||||||||||||||||||||    
T  15556536 acccagcaaaaggattaagcacctgtccaacaaagaggattgtgccggtcaaatcttctcttattagaaataagaatgggtggtcagctacaaagtctag 15556437  T
Q  344 tcgag 348  Q
    |||||    
T  15556436 tcgag 15556432  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 35155929 - 35155835
Alignment:
Q  251 aagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtctagtc 345  Q
    |||||| |||||||| |||||  |||||| |||||||   ||||| ||||||||||| | ||| ||||||||||| ||||||| |||||||||||    
T  35155929 aagagggttgaacacttgtccggcaaagaggattgtttgggtcaaatcttctctaattaaaaataagaaagggtgatcagctataaagtctagtc 35155835  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 35162821 - 35162764
Alignment:
Q  391 tggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 448  Q
    |||||||| ||||| |||||||||  |||||||| ||||| |||||||||||||||||    
T  35162821 tggctgcagcagctacggtgcctttctcatttacttcaatgaaagacttgtgaaatat 35162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 448
Target Start/End: Complemental strand, 35155801 - 35155744
Alignment:
Q  391 tggctgcaacagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 448  Q
    |||||||||||||||  ||||||| ||| ||||| ||||||||| |||| ||||||||    
T  35155801 tggctgcaacagctttagtgcctttttcgtttacttcaataaaacacttctgaaatat 35155744  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 238 - 340
Target Start/End: Complemental strand, 17737052 - 17736950
Alignment:
Q  238 aaaatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaa 337  Q
    ||||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||||||||    
T  17737052 aaaatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaa 17736953  T
Q  338 gtc 340  Q
    |||    
T  17736952 gtc 17736950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 17718637 - 17718537
Alignment:
Q  240 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 339  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||||||||||    
T  17718637 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagt 17718538  T
Q  340 c 340  Q
    |    
T  17718537 c 17718537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 17699694 - 17699604
Alignment:
Q  250 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 340  Q
    |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||||||||||||    
T  17699694 caagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagctacaaagtc 17699604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 17708813 - 17708713
Alignment:
Q  240 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 339  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| |||||||    
T  17708813 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagt 17708714  T
Q  340 c 340  Q
    |    
T  17708713 c 17708713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 240 - 340
Target Start/End: Complemental strand, 17736467 - 17736367
Alignment:
Q  240 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 339  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| |||||||    
T  17736467 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagt 17736368  T
Q  340 c 340  Q
    |    
T  17736367 c 17736367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 250 - 340
Target Start/End: Complemental strand, 16722680 - 16722590
Alignment:
Q  250 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 340  Q
    |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || |||||||||||||| ||||||||    
T  16722680 caagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagcaacaaagtc 16722590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 331
Target Start/End: Complemental strand, 16730679 - 16730588
Alignment:
Q  240 aatcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagc 331  Q
    ||||| ||| |||||||||||| ||||| |||||||||||  || |||||| | || |||||||| |||| ||| || ||||||||||||||    
T  16730679 aatcaaccatcaagaggattgaccacctttccaacaaagagtatggttccactaaactcttctctgatcagaaataaaaaagggtggtcagc 16730588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 352
Target Start/End: Original strand, 9675300 - 9675411
Alignment:
Q  241 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 340  Q
    |||||||| ||||||||||||  ||||||||  ||||||||||||||   ||| | ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  9675300 atcacccaacaagaggattgagaacctgtccggcaaagatgattgtttgggtcgaatcttctctaattagaaataggaaagggtgatcggctataaagtc 9675399  T
Q  341 tagtcgagttgg 352  Q
    || || ||||||    
T  9675400 tattccagttgg 9675411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 241 - 352
Target Start/End: Original strand, 9692322 - 9692433
Alignment:
Q  241 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 340  Q
    |||||||| ||||||||||||  ||||||||  |||||||||| |||   ||||| ||||||||||| | ||| | ||||||||| || |||| ||||||    
T  9692322 atcacccaacaagaggattgagaacctgtccggcaaagatgatcgtttgggtcaaatcttctctaattagaaataggaaagggtgatcggctataaagtc 9692421  T
Q  341 tagtcgagttgg 352  Q
    || || ||||||    
T  9692422 tattccagttgg 9692433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 448
Target Start/End: Original strand, 21463943 - 21463989
Alignment:
Q  402 gcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 448  Q
    |||||||| |||||||| ||||| |||||||||||||||||||||||    
T  21463943 gcttcggtaccttcttcgtttacttcaataaaagacttgtgaaatat 21463989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 250 - 339
Target Start/End: Original strand, 21463785 - 21463874
Alignment:
Q  250 caagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagt 339  Q
    |||||||||||| ||| || |||| |||||  || ||||| | ||| |||||||| |||| ||||||||||||||| |||||||| ||||    
T  21463785 caagaggattgagcacttgcccaataaagagtatggttccggacaaatcttctctgatcaaaaacaagaaagggtgatcagctacgaagt 21463874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 448
Target Start/End: Original strand, 9692469 - 9692517
Alignment:
Q  400 cagcttcggtgccttcttcatttacgtcaataaaagacttgtgaaatat 448  Q
    ||||||| |||||||| || ||||| ||||| |||||||||||||||||    
T  9692469 cagcttcagtgccttcctcgtttacttcaatgaaagacttgtgaaatat 9692517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 344
Target Start/End: Original strand, 20168618 - 20168721
Alignment:
Q  241 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 340  Q
    ||||| || |||||||||||| ||| || || ||||||| ||||||||| ||||| ||||| ||||| | ||| ||||| ||||||| | || ||||||     
T  20168618 atcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggttaacttcaaagtt 20168717  T
Q  341 tagt 344  Q
    ||||    
T  20168718 tagt 20168721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 344
Target Start/End: Complemental strand, 20359666 - 20359563
Alignment:
Q  241 atcacccagcaagaggattgaacacctgtccaacaaagatgattgttccagtcaattcttctctaatcataaacaagaaagggtggtcagctacaaagtc 340  Q
    ||||| || |||||||||||| ||| || || ||||||| ||||||||| ||||| ||||| ||||| | ||| ||||| ||||||| | || ||||||     
T  20359666 atcactcatcaagaggattgagcacttgcccgacaaagaggattgttcccgtcaaatcttccctaattagaaataagaaggggtggttaacttcaaagtt 20359567  T
Q  341 tagt 344  Q
    ||||    
T  20359566 tagt 20359563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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