View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_14 (Length: 467)
Name: NF18963_low_14
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 228 - 451
Target Start/End: Original strand, 10330419 - 10330641
Alignment:
| Q |
228 |
atgtagttaggtattggtgttgagggggcttgttagctttggagaagaaatttgtttgtttgtgaggttgaattggtggagtgtagggttttattgtgta |
327 |
Q |
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| T |
10330419 |
atgtagttaggtattggtgttgagggggcttgttagctttggagaagaaatttgtttgtttgtgaggttgaattggtggagtgtagggttttattgtcta |
10330518 |
T |
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| Q |
328 |
acatttcattgcaggataatatagagcacacttgaatatgagataataatctcgattgaatgtattcggttgaagaatcttactgagttaatatctattt |
427 |
Q |
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| T |
10330519 |
atatttcattgcaggataatgtagagcacacttgaatatgagattataatctcgattgaatgtattcagttgaagaatcttac-aagttaatatctattt |
10330617 |
T |
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| Q |
428 |
tgaagaaatagcatatcccctttg |
451 |
Q |
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| T |
10330618 |
tgaagaaatagcatattccctttg |
10330641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 10330366 - 10330421
Alignment:
| Q |
5 |
gagcagcacagattcgatttggtggaagaatatttttagcagtatgagaggtgatg |
60 |
Q |
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| T |
10330366 |
gagcatcacaaattcaatttggtggaagaatatttttagaattatgagaggtgatg |
10330421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 28827358 - 28827249
Alignment:
| Q |
50 |
gagaggtgatgagataagtggagggagatgatttgtgtataatgttattaataaaatagaaaatggtagtaagacgttgttttcacacgagtcgtggcta |
149 |
Q |
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| T |
28827358 |
gagaggtgacgaggtgaatggagggagatggtttttggataatgttactaagaaaataggaaattgtactaatactttgttttggcacgtgtcgttgtta |
28827259 |
T |
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| Q |
150 |
gatggggagg |
159 |
Q |
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| T |
28827258 |
gatgaggagg |
28827249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 24781379 - 24781448
Alignment:
| Q |
97 |
ttaataaaatagaaaatggtagtaagacgttgttttcacacgagtcgtggctagatggggaggtggtaaa |
166 |
Q |
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| T |
24781379 |
ttaagaaaatagaaaatggtagtgaagcgttgtcctggcatgagtcgtggctaggtggggaggtggtaaa |
24781448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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