View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_15 (Length: 459)
Name: NF18963_low_15
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 8562497 - 8562295
Alignment:
| Q |
16 |
ctttgttcgactctcgtggaacttgatctttctattaataatctcagcagtgaaatcttatgtaagttcggcgcgtgtacttcgttgccattgtatgatt |
115 |
Q |
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| T |
8562497 |
ctttgttcgactctcgtggaactttatctttctattaataatctcagcagtgaaatcttacgtaagttcggcgcgtgtacttcgttgccattgtatgatt |
8562398 |
T |
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| Q |
116 |
cgtggtgaacatctggtggaggtttatcattgttgcttttaacaactt--------tgtgaatgtttaaggttgttgctgctgttgtagaaaacacagta |
207 |
Q |
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| T |
8562397 |
cgcggtgaacttctggtggaggtttatcgttgttgcttttaacaactttgtgcctttgtggatgtttaaggttgttgctgctgttgtagaaaacacagta |
8562298 |
T |
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| Q |
208 |
tat |
210 |
Q |
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||| |
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| T |
8562297 |
tat |
8562295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 346 - 440
Target Start/End: Complemental strand, 8562153 - 8562056
Alignment:
| Q |
346 |
tttgttaaaaatagagaatttaccttagatcttgaatatggttgttgaaattgtttggagcaaaa--ataga-gaatttttatgctgctgttttatgc |
440 |
Q |
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| T |
8562153 |
tttgttaaaaatagagaatttaccttagatcttgaatatggttgttggaattgtttggagcaaaatgaaagatgaatttttatgctgctgttttatgc |
8562056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 6e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 5850775 - 5850969
Alignment:
| Q |
16 |
ctttgttcgactctcgtggaacttgatctttctattaataatctcagcagtgaaatcttatgtaagttcggcgcgtgtacttcgttgccattgtatgatt |
115 |
Q |
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| T |
5850775 |
ctttgttcgactctcgtggaacttgatatttctattaataatctcaacagtgaaatcttacgtaagttcggtgcttgtacttcgttaccattgtatgatt |
5850874 |
T |
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| Q |
116 |
cgtggtgaacatctggtggaggtttatcattgttgcttttaacaactttgtgaatgtttaaggttgttgctgctgttgtagaaaacacagtatat |
210 |
Q |
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| T |
5850875 |
agcggtgaacttccggtggaggtttatcgttgttgctttcaacaactttgtggatgtttaaggttgttgctgctgttgtagaaaacacagtatat |
5850969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 346 - 445
Target Start/End: Original strand, 5851086 - 5851188
Alignment:
| Q |
346 |
tttgttaaaaatagagaatttaccttagatcttgaatatggttgttgaaattgtttggagcaaaa--ataga-gaatttttatgctgctgttttatgcag |
442 |
Q |
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|||||||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||| | ||| ||||||||||||||||||||||||||| |
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| T |
5851086 |
tttgttaaaaatagaggatttaccttagattttggatatggttgttggaattgtttggagcaaaatgaaagatgaatttttatgctgctgttttatgcag |
5851185 |
T |
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| Q |
443 |
atc |
445 |
Q |
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||| |
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| T |
5851186 |
atc |
5851188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 43437564 - 43437478
Alignment:
| Q |
16 |
ctttgttcgactctcgtggaacttgatctttctattaataatctcagcagtgaaatcttatgtaagttcggcgcgtgtacttcgttg |
102 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||| | |||| ||| | | |||| |||||||||||||||||| |
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| T |
43437564 |
ctttgttcgactctcgtggagcttgatctttcatctaataatctcaccggtgatatcccacgcgagtttggcgcgtgtacttcgttg |
43437478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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