View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18963_low_17 (Length: 413)
Name: NF18963_low_17
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 47426667 - 47427073
Alignment:
| Q |
1 |
aattctatagacttgtttctctgttctgttccttgtttaggtctttgtcttggttcactaatagaccttgtttttgccctagaagattctgtcttgttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47426667 |
aattctatagacttgtttctctgttctgttccttgtttaggtctttgtcttggttcactaatagaccttgtttttgccctagaagattctgtcttgttca |
47426766 |
T |
|
| Q |
101 |
tgtaacttggtgatgaccatgattttctaggaggcacaataatgtgacgctgagatgttgataaggttgttgggtccatatattcaatcatgtcactgta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47426767 |
tgtaacttggtgatgaccatgattttctaggaggcacaataatgtgacgctgagatgttgataaggttgttgggtccatatattcaatcatgtcactgta |
47426866 |
T |
|
| Q |
201 |
gtacttttctgggctgtttggtgctgtgagaattgttctaggattattattcatgtgatt---cttcttcttcaattgattttctcgttttgaaattgat |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47426867 |
gtacttttctgggctgtttggtgctgtgagaattgttctaggattattattcatgtgattctccttctttttcaattgattttctcgttttgaaattgat |
47426966 |
T |
|
| Q |
298 |
cgacttcttgaataatatgccattgagtcatactttctgcttttaacatctagtggaccacttctacttctcataacctccaacatttcttccatgctca |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47426967 |
cgacttcttgaataatatgccattgagtcatactttctgcttttaacatctagtggaccacttctacttctcataacctccaacatttcttccatgctca |
47427066 |
T |
|
| Q |
398 |
tattctt |
404 |
Q |
| |
|
||||||| |
|
|
| T |
47427067 |
tattctt |
47427073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University