View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_18 (Length: 404)
Name: NF18963_low_18
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 25897129 - 25897371
Alignment:
| Q |
1 |
tatggcacacaaccccgttcttcatgctcgtaccaagcacatggagatagacctattttttgttcgtgagaaagttttgggcaaggtccttgatgttgtt |
100 |
Q |
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| T |
25897129 |
tatggcacacaaccc-gttcttcatgctcgtaccaagcacatggagatagacctattttttgtccgtgagaaagttttgggcaaggtccttgatgttgtt |
25897227 |
T |
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| Q |
101 |
catattcctggttcaactcagaaacattttcaccaagccattggctactgctaagttcttggagtttaggtgcaagctcaaagtggctgccccacccgga |
200 |
Q |
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| T |
25897228 |
catattcctggttcaactcagaaacattttcaccaagccattggctactgctaagttcttggagtttaggtacaagctcaaagtggctgccccacccaga |
25897327 |
T |
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| Q |
201 |
ccttgcagggtgtgtgtgaatgtattagaataaaaagagcttag |
244 |
Q |
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| T |
25897328 |
ccttgcagggtgtgtgtgaatgtattagaataaaaagaacttag |
25897371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 240 - 389
Target Start/End: Original strand, 25898133 - 25898282
Alignment:
| Q |
240 |
cttagttagttcaaacttaagctcactgagtcaggaattcagtgtcactcttatatctctctctcttttcttttagtgacagctgttagtacagctcatg |
339 |
Q |
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| T |
25898133 |
cttagttagttcaaacttaagctcactgagtcaggaatacagtgtcactcttatatctctttctcttttcttttagtgacagctgttagtacagctcatg |
25898232 |
T |
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| Q |
340 |
cttagctgatgccagctggcacagtctgttacaaataagcactagtataa |
389 |
Q |
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| T |
25898233 |
cttagctgatgctaactggcacagtctgttacaaataagcactagtataa |
25898282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 213 - 321
Target Start/End: Original strand, 25892477 - 25892574
Alignment:
| Q |
213 |
tgtgtgaatgtattagaataaaaagagcttagttagttcaaacttaagctcactgagtcaggaattcagtgtcactcttatatctctctctcttttcttt |
312 |
Q |
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| T |
25892477 |
tgtgtgaatgtattagaataaatagaactcagttagttcaaacttaagcttactga-----------agtgtcactcatatatatctttctcttttcttt |
25892565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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