View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18963_low_2 (Length: 723)
Name: NF18963_low_2
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 191 - 707
Target Start/End: Original strand, 8764742 - 8765256
Alignment:
| Q |
191 |
tcctttgaagtatctaggctgccggtaggagcgaagtcccattcttctagaacttgagacctattaatcaaccttattgagtctaaccttaactcttggt |
290 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8764742 |
tcctttgaagtatctaggctgccggtaggagcgaagtcccattcttctagaatttgagacctattaatcaaccttattgagtctaaccttaactcttggt |
8764841 |
T |
|
| Q |
291 |
ccaatagatttgtgagtcttgatgg-tagagtggtttttaattaattatgttttgaattccatcaccannnnnnncttatcatttatgacaatgccggtg |
389 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
8764842 |
ccaatagatttgtgagtcttggggggtagagtggtttttaattaattctgttttgaattccatcaccatttttttcttatcatttatgacaatgccggtg |
8764941 |
T |
|
| Q |
390 |
aaggtttggaaacagattgttcgcctacaaaaacgnnnnnnnnnnatggggaggatcttagggagggaataaaatatcttgggctagctggtcaaaaatt |
489 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8764942 |
aaggtttggaaacagattgttcgcctacaaagaagtttttttg---tggggaggatctaagggagggaataaaatatcttgggctagctggtcaaaaatt |
8765038 |
T |
|
| Q |
490 |
tgtaagctgaaaagagagggtgctttggaggtaatagatagatcttgttaacttggccatgtttggtaactagaggtggaggattctagcggagggtgat |
589 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8765039 |
tgtaagctgaaaagagagggtgctttggaggtaagagatagatcttgttaacttggccatgtttggtaactggaggtggaggattctagcggagggtgat |
8765138 |
T |
|
| Q |
590 |
ggcttgtggcgtagtatcttttcagccaggtatgggtctgccacgacgtcttgtaattttgggatgagagctaggtctctgaaatctccttcgccctggt |
689 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8765139 |
ggcttgtggcgtagtatcttttcatccaggtatgggtctgccgcgatgtcttgtaattttgggatgagagctaggtccctgaaatctccttcgccctggt |
8765238 |
T |
|
| Q |
690 |
ggaaaaggggtttctttg |
707 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
8765239 |
ggaaaaggggtttctttg |
8765256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 12 - 123
Target Start/End: Original strand, 8764558 - 8764666
Alignment:
| Q |
12 |
agcaaaggagaaaaaattatgtgtaaaattgttagaaatagagaaattaattaaatcaagaaacttgtgggaagtgtaataatatttatcgagttcgtct |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
8764558 |
agcaaaggagaaaaaattatctgtaaaattgttagaa---gagaaattaattaaatcaagaaacttgtgggaagtgtaataatatttatcgagctcgcct |
8764654 |
T |
|
| Q |
112 |
ctagtccgtggg |
123 |
Q |
| |
|
||||| ||||| |
|
|
| T |
8764655 |
atagtctgtggg |
8764666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 8764690 - 8764740
Alignment:
| Q |
119 |
gtgggggttcatgtagacaactctttttcttaggatggcggagggatttctt |
170 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8764690 |
gtgggggttcatgtagacaactctttt-cttaggatggcggagggatttctt |
8764740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University