View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18963_low_21 (Length: 365)

Name: NF18963_low_21
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18963_low_21
NF18963_low_21
[»] chr4 (7 HSPs)
chr4 (10-341)||(25017945-25018273)
chr4 (10-222)||(25039175-25039384)
chr4 (121-231)||(4600708-4600818)
chr4 (121-251)||(4624826-4624956)
chr4 (158-214)||(25160529-25160585)
chr4 (287-329)||(4624781-4624823)
chr4 (128-189)||(25180792-25180853)
[»] chr2 (4 HSPs)
chr2 (129-227)||(18803706-18803804)
chr2 (151-198)||(42167707-42167754)
chr2 (133-199)||(42290147-42290213)
chr2 (133-198)||(42157212-42157277)
[»] chr3 (1 HSPs)
chr3 (155-216)||(9213235-9213296)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 341
Target Start/End: Complemental strand, 25018273 - 25017945
Alignment:
Q  10 aagaatattggcaagtaataacaaatgatgaatttattgtcacatccttcagttcacctagagtttcatctataggtaaatctttcatttatacgaacta 109  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  25018273 aagaatattgccaagtaataacaaatgatgaatttattgtcacatccttcagttcacctagagtttcatctattggtgaatctttcatttatacgaacta 25018174  T
Q  110 actaacggctttaacaaatatgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgata 209  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25018173 actaacggcttaaacaaatatgcagaaggaaaagtaagtgcgggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgata 25018074  T
Q  210 atggtaatgcataataatacatgcttcacaagtatatcatatatattcatgaagttcataatac-nnnnnnnnactaaatgatgttcataataatagtaa 308  Q
    ||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  25018073 atggtaatgcataataatacatgcttcacaagtatatc----atattcatgaagttcataatactttttttttactaaatgatgttcataataatagtaa 25017978  T
Q  309 tataaattgatggaattattggtatataggtct 341  Q
    |||||||||||||||||||||||||||||||||    
T  25017977 tataaattgatggaattattggtatataggtct 25017945  T

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Target: chr4; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 25039384 - 25039175
Alignment:
Q  10 aagaatattggcaagtaataacaaatgatgaatttattgtcacatccttcagttcacctagagtttcatctataggtaaatctttcatttatacgaacta 109  Q
    |||||||||| |||||||||||||||  ||||||||  ||||||||||| | |||||||| |||||||| | ||||| ||||||||||||| | ||||||    
T  25039384 aagaatattgccaagtaataacaaatcttgaattta--gtcacatccttta-ttcacctaaagtttcatgtctaggtgaatctttcatttacatgaacta 25039288  T
Q  110 actaacggctttaacaaatatgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgata 209  Q
    | |||| | ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  25039287 attaacagttttaacaaatatgcagaaggaaaagtaagtgaaggtataaaccaagaaggaatcaaatattacaacaacctgatcaatgaactacttgata 25039188  T
Q  210 atggtaatgcata 222  Q
    |||||||||||||    
T  25039187 atggtaatgcata 25039175  T

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Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 121 - 231
Target Start/End: Complemental strand, 4600818 - 4600708
Alignment:
Q  121 taacaaatatgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaatgca 220  Q
    ||||||||||||||| |||||| ||||||  |||||||| ||||||||||||| || |||||||||||||||  |||||||||||| |||||||||| ||    
T  4600818 taacaaatatgcagatggaaaactaagtggcggtataaaccaagaaggaatcagattttacaacaatctgattgatgagctacttgctaatggtaataca 4600719  T
Q  221 taataatacat 231  Q
    |||||||||||    
T  4600718 taataatacat 4600708  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 121 - 251
Target Start/End: Complemental strand, 4624956 - 4624826
Alignment:
Q  121 taacaaatatgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaatgca 220  Q
    ||||||||||||||  |||||| ||||||  ||| |||| |||| |||||||| || |||||| || |||||| |||||||||||| |||||||||||||    
T  4624956 taacaaatatgcagctggaaaaataagtgacggtgtaaaccaagcaggaatcatattttacaagaacctgatctatgagctacttgctaatggtaatgca 4624857  T
Q  221 taataatacatgcttcacaagtatatcatat 251  Q
    ||||| | ||| ||| |  ||||||||||||    
T  4624856 taatattccatactttattagtatatcatat 4624826  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 214
Target Start/End: Complemental strand, 25160585 - 25160529
Alignment:
Q  158 aatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggt 214  Q
    ||||||||||||||||| |||||||| ||||| ||||||||| |||| | |||||||    
T  25160585 aatcaagaaggaatcaactattacaataatctcatcaatgagttactagctaatggt 25160529  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 329
Target Start/End: Complemental strand, 4624823 - 4624781
Alignment:
Q  287 atgatgttcataataatagtaatataaattgatggaattattg 329  Q
    |||||||||||| | ||| ||||||||||||||||||||||||    
T  4624823 atgatgttcatactcataataatataaattgatggaattattg 4624781  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 189
Target Start/End: Complemental strand, 25180853 - 25180792
Alignment:
Q  128 tatgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatct 189  Q
    ||||||||||||||| |||||| ||| || ||||||||||||||  | |||||||| |||||    
T  25180853 tatgcagaaggaaaactaagtggaggaattaatcaagaaggaattgactattacaataatct 25180792  T

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Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 18803706 - 18803804
Alignment:
Q  129 atgcagaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaatgcataataat 227  Q
    |||||||||||||| | ||||  |||| |||  |||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18803706 atgcagaaggaaaacttagtggcggtaaaaacaaagaaggaatcagattttacaacaacctgatcaatgagctacttgataatggtaatgcataataat 18803804  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 198
Target Start/End: Complemental strand, 42167754 - 42167707
Alignment:
Q  151 aggtataaatcaagaaggaatcaaatattacaacaatctgatcaatga 198  Q
    ||||||||| |||||||||||||||||||||||||| || ||||||||    
T  42167754 aggtataaaccaagaaggaatcaaatattacaacaacctcatcaatga 42167707  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 199
Target Start/End: Original strand, 42290147 - 42290213
Alignment:
Q  133 agaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatgag 199  Q
    |||||||||| | | || ||||||||| ||||||||| |||||||||||||||| || |||||||||    
T  42290147 agaaggaaaaattaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatgag 42290213  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 42157277 - 42157212
Alignment:
Q  133 agaaggaaaagtaagtgcaggtataaatcaagaaggaatcaaatattacaacaatctgatcaatga 198  Q
    |||||||||| | | || ||||||||| ||||||||| |||||||||||||||| || ||||||||    
T  42157277 agaaggaaaacttaatggaggtataaaccaagaaggagtcaaatattacaacaacctcatcaatga 42157212  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 9213235 - 9213296
Alignment:
Q  155 ataaatcaagaaggaatcaaatattacaacaatctgatcaatgagctacttgataatggtaa 216  Q
    |||||||||||||||||||| |||||||||||| | ||||||||| || | | |||||||||    
T  9213235 ataaatcaagaaggaatcaactattacaacaatttcatcaatgagttattggctaatggtaa 9213296  T

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