View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_26 (Length: 312)
Name: NF18963_low_26
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_26 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 312
Target Start/End: Complemental strand, 41836990 - 41836682
Alignment:
| Q |
7 |
gtgagatgaaatatttagaagaataatgacatagaatatgaacgaaaaccgtgtaaatgtattgaatggagaagatacaaaatacaagatacattaatct |
106 |
Q |
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| T |
41836990 |
gtgagatgaaatatttagaagaataatgacatagaatatgaacgaaaaccgtgtaaatgtattgaatggagaagatgcaaaatacaaggtacattaatct |
41836891 |
T |
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| Q |
107 |
tatatgtaaaaaggattatgctaacaaactatccttacttgattaacaagtaatcgtgtgatcaagataatctctaac--taactaactcaatcttattt |
204 |
Q |
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| T |
41836890 |
tatatgtaaaaaggattatgctaataaactacgcttacttgattaacaagtaaccgtgtgatcaagataatctctaactataactaactcaatcttattt |
41836791 |
T |
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| Q |
205 |
agctaacttgtagcataaacaactaacaaaccgactacttggcgtttaaatcatacatcaaacaaatcagct-atattgttcattcatctcttcttcaaa |
303 |
Q |
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| T |
41836790 |
agctaacttgtagcataaacaactaacaaaccgactacttagcgtttaaattatacatcaaacaaatcagctaatattgttcattcatctcttcttcaaa |
41836691 |
T |
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| Q |
304 |
ctttctgtc |
312 |
Q |
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| T |
41836690 |
ctttctgtc |
41836682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 36975435 - 36975494
Alignment:
| Q |
174 |
taatctctaactaactaactcaatcttatttagctaacttgtagcataaacaactaacaa |
233 |
Q |
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| T |
36975435 |
taatctctaactagctaagtcgatcatatttagctaacttgtagcataaacaactaacaa |
36975494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 235
Target Start/End: Complemental strand, 33830134 - 33830066
Alignment:
| Q |
165 |
tgatcaagataatctctaactaactaactcaatcttatttagctaacttgtagcataaacaactaacaaac |
235 |
Q |
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| T |
33830134 |
tgatcaagttaatctctagctgactaactcaat--tatttagctaacttgtatcttaagcaactaacaaac |
33830066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 235
Target Start/End: Original strand, 33837832 - 33837900
Alignment:
| Q |
165 |
tgatcaagataatctctaactaactaactcaatcttatttagctaacttgtagcataaacaactaacaaac |
235 |
Q |
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| T |
33837832 |
tgatcaagttaatctctagctgactaactcaat--tatttagctaacttgtatcttaagcaactaacaaac |
33837900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 33087522 - 33087423
Alignment:
| Q |
141 |
ttacttgattaacaagtaatcg-tgtgatcaagataatctctaacta----actaactcaatcttatttagctaacttgtagcataaacaactaacaaac |
235 |
Q |
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| T |
33087522 |
ttacttgattaacaagtaaaccatataatcaagttaatctctaactagctaactaactcagtcttatttcgctaacttgtagcttaagcaacgaacaaac |
33087423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 30301825 - 30301774
Alignment:
| Q |
141 |
ttacttgattaacaagtaatcgtgtgatcaagataatctctaactaactaact |
193 |
Q |
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| T |
30301825 |
ttacttgactaacaagtaatcatgtgatcaag-ttatttctaactaactaact |
30301774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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