View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_34 (Length: 265)
Name: NF18963_low_34
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 7162480 - 7162730
Alignment:
| Q |
1 |
atcagaatggagttgctgcaatgcttgagatgatgaatagatgtatttttctagatgtcatggtattggaggaagatacatttgacccagacattgtaga |
100 |
Q |
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| T |
7162480 |
atcagaatggagttgctgcaatgcttgagatgatggatagatgtatttttctagatgtcatggtattggaggaagatacatttgacccagacattgtaga |
7162579 |
T |
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| Q |
101 |
ggccaaaaattatagcaaaacaatttgatagggggatgactaacattgagtggcacctaagcttccctga---gttcattgaaattcgttgtagaaacta |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
7162580 |
ggccaaaaattatagcaaaacaatttgatagggggatgactaacattgagtggcacctaagcttccctgaagctttcattgaaattcgttgcagaaacta |
7162679 |
T |
|
| Q |
198 |
cttggattataatcctattttcatgagatgtgatggtctcctgcctaaggt |
248 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7162680 |
cttggattataatcctattttcatgagatgtgatggtctcctgcctaaggt |
7162730 |
T |
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