View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18963_low_35 (Length: 262)

Name: NF18963_low_35
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18963_low_35
NF18963_low_35
[»] chr5 (6 HSPs)
chr5 (97-262)||(7162266-7162431)
chr5 (4-94)||(7161879-7161969)
chr5 (17-186)||(29087524-29087685)
chr5 (5-181)||(34378146-34378315)
chr5 (5-177)||(18593295-18593460)
chr5 (5-95)||(698488-698578)
[»] chr7 (16 HSPs)
chr7 (4-181)||(3867164-3867334)
chr7 (5-181)||(38306309-38306478)
chr7 (5-181)||(47325749-47325918)
chr7 (4-181)||(33435157-33435327)
chr7 (5-181)||(5860152-5860321)
chr7 (5-181)||(37795037-37795206)
chr7 (5-181)||(41089612-41089781)
chr7 (5-181)||(44353427-44353597)
chr7 (5-91)||(31971998-31972084)
chr7 (5-181)||(3419519-3419689)
chr7 (5-181)||(10244230-10244399)
chr7 (4-181)||(34390010-34390180)
chr7 (101-181)||(6584957-6585037)
chr7 (98-183)||(35745776-35745862)
chr7 (17-60)||(6585043-6585086)
chr7 (100-179)||(48161977-48162057)
[»] chr3 (17 HSPs)
chr3 (4-181)||(43012423-43012593)
chr3 (6-181)||(19176550-19176720)
chr3 (5-181)||(47235746-47235915)
chr3 (5-181)||(17551005-17551169)
chr3 (5-186)||(45163898-45164072)
chr3 (5-183)||(2392370-2392541)
chr3 (5-181)||(20611831-20611999)
chr3 (5-181)||(9583918-9584086)
chr3 (98-181)||(45398844-45398927)
chr3 (4-172)||(23328213-23328374)
chr3 (5-181)||(53247948-53248118)
chr3 (5-164)||(31482949-31483100)
chr3 (17-175)||(40023449-40023599)
chr3 (5-95)||(2394134-2394224)
chr3 (98-161)||(21342603-21342666)
chr3 (24-164)||(34475637-34475770)
chr3 (24-60)||(30352322-30352358)
[»] chr2 (10 HSPs)
chr2 (4-181)||(387221-387392)
chr2 (5-181)||(39338729-39338898)
chr2 (5-175)||(10524155-10524317)
chr2 (4-181)||(7874339-7874509)
chr2 (5-181)||(17116743-17116912)
chr2 (98-166)||(5254319-5254387)
chr2 (101-181)||(14405246-14405326)
chr2 (100-161)||(14106474-14106536)
chr2 (4-60)||(7460837-7460894)
chr2 (4-60)||(14106385-14106442)
[»] chr4 (9 HSPs)
chr4 (5-186)||(8255070-8255244)
chr4 (5-186)||(8268488-8268662)
chr4 (5-181)||(30167428-30167597)
chr4 (5-181)||(30964489-30964654)
chr4 (98-183)||(35341288-35341373)
chr4 (5-92)||(4305855-4305941)
chr4 (5-58)||(8706008-8706061)
chr4 (98-163)||(31050611-31050677)
chr4 (98-174)||(2825838-2825914)
[»] chr1 (14 HSPs)
chr1 (7-181)||(5389287-5389454)
chr1 (18-180)||(24684355-24684510)
chr1 (5-181)||(31585623-31585793)
chr1 (5-183)||(24449794-24449965)
chr1 (5-177)||(46692683-46692848)
chr1 (5-95)||(5459288-5459378)
chr1 (37-181)||(30685800-30685937)
chr1 (5-181)||(41920500-41920674)
chr1 (98-181)||(27031790-27031873)
chr1 (99-181)||(24658977-24659059)
chr1 (5-95)||(6764245-6764335)
chr1 (98-164)||(7857718-7857784)
chr1 (107-181)||(46814426-46814500)
chr1 (145-181)||(19598684-19598720)
[»] chr8 (16 HSPs)
chr8 (18-180)||(36630886-36631041)
chr8 (5-181)||(31207226-31207395)
chr8 (5-181)||(37986722-37986891)
chr8 (5-181)||(20138474-20138644)
chr8 (5-181)||(24995258-24995428)
chr8 (5-181)||(9519547-9519717)
chr8 (5-181)||(12898139-12898307)
chr8 (5-181)||(32066159-32066328)
chr8 (5-181)||(34388870-34389038)
chr8 (22-89)||(22773632-22773699)
chr8 (5-95)||(41893266-41893355)
chr8 (101-181)||(15821332-15821412)
chr8 (46-181)||(16457366-16457494)
chr8 (98-177)||(38577740-38577819)
chr8 (100-181)||(12198022-12198102)
chr8 (100-181)||(12442450-12442530)
[»] scaffold0343 (1 HSPs)
scaffold0343 (5-181)||(5753-5923)
[»] chr6 (3 HSPs)
chr6 (5-181)||(3117541-3117710)
chr6 (5-87)||(10541967-10542049)
chr6 (5-81)||(14663218-14663294)
[»] scaffold0068 (1 HSPs)
scaffold0068 (24-175)||(35655-35799)


Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 7162266 - 7162431
Alignment:
Q  97 tagcttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgacttctgaagacagcact 196  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |  ||||||||| |    
T  7162266 tagcttccataacctcgcgacctccgatccatcgaaagagcacaaaacaaaaacccaaaaaccaacttgagtcaaagaactgactcccaaagacagcagt 7162365  T
Q  197 tggttaatttaaataatgcaattcaaggcacttggttcgtcctaggggacttttaagaaattattt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7162366 tggttaatttaaataatgcaattcaaggcacttggttcgtcctaggggacttttaagaaattattt 7162431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 7161879 - 7161969
Alignment:
Q  4 ccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagct 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  7161879 ccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagaacacctgaccaaaggatcatgcagct 7161969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 29087685 - 29087524
Alignment:
Q  17 tcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttccataacctcgcga 116  Q
    |||||||||| ||||||||||||||||   ||| ||||||||||| ||||||||||||||||||||||||||| ||||||       |||||||||||||    
T  29087685 tcaaaataaagctcccagaccccaacatctaagttgagccacata-cgaagagcacctgaccaaaggatcatggagctac-------cataacctcgcga 29087594  T
Q  117 cctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgacttctga 186  Q
    ||||||||||| |||||||||| ||||||||| |||| ||||||| |||| |||||||||||||| ||||    
T  29087593 cctccgatccaccgaaagagcacaaaacaaaagcccagaaaccaatttgattcaaagaactgactcctga 29087524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 34378315 - 34378146
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| |||||||||||||| || |||||||||| |||||||||||||||  ||||||||| || ||| ||||||||  || |||      ||     
T  34378315 caaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacattacgaagagcatctaaccgaaggatcaaacaacta------tca 34378222  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      |||||||||||||||| |||| |||||||||| ||||| ||| |||||||||||||||| |||||||||||||||    
T  34378221 caaacctcgcgacctccggtccaccgaaagagcacaaaac-aaagcccaaaaaccaacttgtgtcaaagaactgact 34378146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 177
Target Start/End: Complemental strand, 18593460 - 18593295
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||| | || ||||||||||||||||||||||||| |||| |||||||||| ||||||| ||||| ||| |||||||||||| |||      ||     
T  18593460 caaagaacatcctccaaataaaactcccagaccccaacacccaagttgagccacatttcgaagaacacctaaccgaaggatcatgcaccta------tca 18593367  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaact 177  Q
      || |||||||||||||| ||| |||||||||| || ||  || ||||||||||||||||||||||||||||    
T  18593366 caaatctcgcgacctccgaaccaccgaaagagcacaacac-taagcccaaaaaccaacttgagtcaaagaact 18593295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 698578 - 698488
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagcta 95  Q
    ||||||||||| || ||||||||||| ||||||||||||| ||||||||||||||| || |||||||||| ||| |||||| |||||||||    
T  698578 caaagaacaccctccaaataaaactctcagaccccaacacccaagctgagccacatttcaaagagcacctaaccgaaggattatgcagcta 698488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 6e-52; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 3867334 - 3867164
Alignment:
Q  4 ccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    |||||||||||| ||||||||||||| ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||       || |||    
T  3867334 ccaaagaacaccctcaaaataaaacttccatactccaacacccaagctgagccacatatcgaagagcacctgaccaaaggatcatgc-------agtttc 3867242  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||||||||||||||||| |||||| || ||||||| ||| ||||| ||||||||||||||||||||||||||||||||    
T  3867241 cataacctcgcgacctctgatccaccgcaagagcacaaagcaaaagcccaaaaaccaacttgagtcaaagaactgact 3867164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 38306478 - 38306309
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||||||      ||     
T  38306478 caaagaacaccctcaaaataaaactcacagaccccaacacccaagctgagccacatatcgaagagcacttaaccgaaggatcatgcagcta------tca 38306385  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||| |||||||||||||| || || ||| ||||||||||||||||||||||||||||||||    
T  38306384 caaacctcgcgacctccgaaccatcgaaagagcacaacac-aaagcccaaaaaccaacttgagtcaaagaactgact 38306309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 47325749 - 47325918
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||| ||||||      ||     
T  47325749 caaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggatcattcagcta------tca 47325842  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      |||||||||||||||||||||||||||||||| |  || ||| ||||||||||||||||||||||||| ||||||    
T  47325843 caaacctcgcgacctccgatccatcgaaagagcacagcac-aaagcccaaaaaccaacttgagtcaaagagctgact 47325918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 33435327 - 33435157
Alignment:
Q  4 ccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    |||||||||||| |||||| ||||||| |||||| |||||  ||||||||||||||  ||||||||||||||||| ||||||||||       ||||||     
T  33435327 ccaaagaacaccctcaaaagaaaactctcagacctcaacaaccaagctgagccacaattcgaagagcacctgaccgaaggatcatg-------tagcttt 33435235  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    || ||||||||||||||||||||| |||||||||| ||||||||  |||| |||| |||||||| |||||||||||||    
T  33435234 cacaacctcgcgacctccgatccaccgaaagagcacaaaacaaatgcccacaaacgaacttgagacaaagaactgact 33435157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 5860152 - 5860321
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||  ||||||||||||||||      ||     
T  5860152 caaagaacaccctgaaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaactgaaggatcatgcagcta------tca 5860245  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||| ||| |||||||||| || || ||| |||||||||||||||| ||||||||| |||||    
T  5860246 caaacctcgcgacctccgaaccaccgaaagagcacaacac-aaagcccaaaaaccaacttgcgtcaaagaattgact 5860321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 37795206 - 37795037
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| |||||||||||||| || |||||||||| ||||||||||||||  ||||||||||||| ||| ||||||||||||||||      ||     
T  37795206 caaagaacaccctcaaaataaaactctcaaaccccaacacccaagctgagccacagttcgaagagcacctaaccgaaggatcatgcagcta------tca 37795113  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||| ||| |||||||||| || || ||| ||||||||||||||||| ||||||||||||||    
T  37795112 caaacctcgcgacctccgaaccaccgaaagagcacaacac-aaagcccaaaaaccaacttgactcaaagaactgact 37795037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 41089612 - 41089781
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||   ||||| |||  ||||||||||||| | | ||| |||||||||||       |||    
T  41089612 caaagaacaccctcaaaataaaactcccagaccctaacacccatcttgagctacacttcgaagagcacctcaacgaagaatcatgcagct-------tcc 41089704  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    | ||||||||||||||||||||| ||||||| || ||||||||| | ||||||||||||||||||||||| ||||||    
T  41089705 acaacctcgcgacctccgatccaccgaaagatcacaaaacaaaagctcaaaaaccaacttgagtcaaagagctgact 41089781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 44353427 - 44353597
Alignment:
Q  5 caaagaacaccatcaaaa-taaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||| | | ||||| ||||||||||||| ||| ||||||||||||||||      ||    
T  44353427 caaagaacaccctcaaaaataaaactcccagaccccaacacccaagccgggtcacatttcgaagagcacctaaccgaaggatcatgcagcta------tc 44353520  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
       ||||||||||||||||||||| |||||||||| || || ||| ||||||||||||| | ||||||||||||||||    
T  44353521 acaaacctcgcgacctccgatccaccgaaagagcacaacac-aaagcccaaaaaccaacataagtcaaagaactgact 44353597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 31971998 - 31972084
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgca 91  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||    
T  31971998 caaagaacaccctccaaataaaactcccagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggatcatgca 31972084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 3419519 - 3419689
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| | ||||||||||||||| |||||||||| |||| | |||||||  |||||| |||||| ||| |||||||| |||||||      ||     
T  3419519 caaagaacacccttaaaataaaactcccaaaccccaacacccaagttaagccacaattcgaagcgcacctaaccgaaggatcaagcagcta------tca 3419612  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||| | |||||| |||||| |||||||||| | ||  ||| ||||||||||||||||||||||||| ||||||    
T  3419613 caaaccttgtgacctctgatccaccgaaagagcacagaaacaaagcccaaaaaccaacttgagtcaaagagctgact 3419689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 10244399 - 10244230
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    |||||| |||| || || ||||| |||||||||| ||||| ||||||||||||||  || |||||||||| ||| |||||||||||| |||      ||     
T  10244399 caaagaccaccctccaactaaaaatcccagacccaaacacccaagctgagccacaattcaaagagcacctaaccgaaggatcatgcaacta------tca 10244306  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||| |||  ||||||||| || || |||  |||||||| ||||||||||||||||||||||    
T  10244305 caaacctcgcgacctccgaaccactgaaagagcacaacac-aaaggccaaaaactaacttgagtcaaagaactgact 10244230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 34390180 - 34390010
Alignment:
Q  4 ccaaagaacacca-tcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagctt 102  Q
    ||||||||||||  ||||||||||||||||||||  |||||| |||| |||||||||| | ||| ||| ||| | | || || |||||||||       |    
T  34390180 ccaaagaacacccctcaaaataaaactcccagactacaacacccaagttgagccacattt-gaaaagctcctaatcgaatgaacatgcagct-------t 34390089  T
Q  103 ccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||| |||||| |||||||||||||| |||||||||| |||| |||| ||||||||||||||| || |||||| ||||||    
T  34390088 ccacaacctctcgacctccgatccaccgaaagagcacaaaataaaagcccaaaaaccaacttaagccaaagagctgact 34390010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 6585037 - 6584957
Alignment:
Q  101 ttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||||| |||||| | |||||||||||| |||||||||| ||||||||| ||||||||||||||| || |||||| ||||||    
T  6585037 ttccacaacctctcaacctccgatccaccgaaagagcacaaaacaaaagcccaaaaaccaacttaagccaaagagctgact 6584957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 35745776 - 35745862
Alignment:
Q  98 agcttccataacctcgcgacctccgatccatcgaaagagcataaaa-caaaaacccaaaaaccaacttgagtcaaagaactgacttc 183  Q
    |||||||| |||||| | |||||| ||||| |||||||||| |||| ||||| |||||||||||||||||| ||||||  |||||||    
T  35745776 agcttccacaacctctccacctccaatccaccgaaagagcacaaaaacaaaagcccaaaaaccaacttgagccaaagagatgacttc 35745862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 6585086 - 6585043
Alignment:
Q  17 tcaaaataaaactcccagaccccaacacacaagctgagccacat 60  Q
    ||||||||||||||||||||  |||||| |||||||||||||||    
T  6585086 tcaaaataaaactcccagacttcaacacccaagctgagccacat 6585043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 179
Target Start/End: Original strand, 48161977 - 48162057
Alignment:
Q  100 cttccataacctcgcgacctccgatccatcgaaagagcataaaa-caaaaacccaaaaaccaacttgagtcaaagaactga 179  Q
    |||||| |||||| ||||||| |||||| | |||||||| |||| |||||  ||||||| ||| ||||| |||||||||||    
T  48161977 cttccacaacctctcgacctctgatccaccaaaagagcacaaaaacaaaagtccaaaaatcaatttgagccaaagaactga 48162057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 9e-45; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 43012593 - 43012423
Alignment:
Q  4 ccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    |||||||||||| ||||| ||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| || ||||||||       | ||||    
T  43012593 ccaaagaacaccctcaaattaaaactcctagaccccaacacccaagctgagccacatttcgaagagcacctgaccgaacgatcatgc-------aacttc 43012501  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    || |||||||||||||| ||| || |||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  43012500 cacaacctcgcgacctctgattcaccgaaagagcacaaaacaaaagctcaaaaaccaacttgagtcaaagaactgact 43012423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 181
Target Start/End: Complemental strand, 19176720 - 19176550
Alignment:
Q  6 aaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgacc--aaaggatcatgcagctactagcttc 103  Q
    |||||||||| |||||||||||| |||||||||| |||| |||||||||||||||  ||||||||||||||||  ||||||||||||||||       ||    
T  19176720 aaagaacaccctcaaaataaaacacccagaccccgacacccaagctgagccacattacgaagagcacctgaccgaaaaggatcatgcagct-------tc 19176628  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    || ||||| ||||||||||||||| | |||||||| ||| ||||| ||||||||||||||||||||||||||||||||    
T  19176627 cacaaccttgcgacctccgatccaccaaaagagcacaaatcaaaagcccaaaaaccaacttgagtcaaagaactgact 19176550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 47235915 - 47235746
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| |||||||||||||| ||||||||||||| |||||||| |||||| ||||||||||||| ||| ||||||||||||||||      ||     
T  47235915 caaagaacaccctcaaaataaaactcgcagaccccaacacccaagctgaaccacatttcgaagagcacctaaccgaaggatcatgcagcta------tca 47235822  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      |||||||||||||| |||||| |||||||||| || || ||| ||||||||||||||| ||||||||||| ||||    
T  47235821 caaacctcgcgacctctgatccaccgaaagagcaaaacac-aaagcccaaaaaccaacttaagtcaaagaaccgact 47235746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 17551169 - 17551005
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||| ||||||||||| ||||||||||||| ||||     |||||||||||      ||     
T  17551169 caaagaacaccctcaaaataaaactctcagaccccaacacccaaactgagccacatttcgaagagcacctaacca-----tcatgcagcta------tca 17551081  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      |||||||||||||||||| ||||||||||||| || |||||  ||||||||||||||||||||||||||||||||    
T  17551080 caaacctcgcgacctccgatgcatcgaaagagcacaacacaaag-cccaaaaaccaacttgagtcaaagaactgact 17551005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 186
Target Start/End: Complemental strand, 45164072 - 45163898
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    |||| |||||| ||||||||||||||| |||||||||||| |||||| |||||||| ||||||||||||| ||| ||||||||||||||||      ||     
T  45164072 caaataacaccctcaaaataaaactcctagaccccaacacccaagctaagccacatttcgaagagcacctaaccgaaggatcatgcagcta------tca 45163979  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgacttctga 186  Q
      ||| ||| ||||||||||||| |||||||||| || || ||| ||||||||||||||| || |||| |||||||||||||    
T  45163978 caaacttcgtgacctccgatccaccgaaagagcacaacac-aaagcccaaaaaccaacttaagacaaaaaactgacttctga 45163898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 2392370 - 2392541
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    |||| ||||||  |||||||||||||| |||||||||||| ||||||||||||||| | ||||||  ||| ||| ||||||||||||||||  |     |    
T  2392370 caaataacacctacaaaataaaactcctagaccccaacacccaagctgagccacattttgaagagatcctaaccgaaggatcatgcagctagca-----c 2392464  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgacttc 183  Q
    | ||||||||||||||||||||| |||||||||| || || ||| ||||||||||||||| || |||||||||||||||    
T  2392465 a-aacctcgcgacctccgatccaccgaaagagcacaacac-aaagcccaaaaaccaacttaagacaaagaactgacttc 2392541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 20611999 - 20611831
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| ||| ||||||||||| |||||| ||||| ||||||||| ||||| ||||||||||||| ||| ||||||||| ||||||      ||     
T  20611999 caaagaacaccctcagaataaaactcctagaccc-aacacccaagctgagtcacatttcgaagagcacctaaccgaaggatcattcagcta------tca 20611907  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||||||| |||||||||| ||  | ||| ||||||||||||||| ||||||||||||||||    
T  20611906 caaacctcgcgacctccgatccaccgaaagagcacaacgc-aaagcccaaaaaccaacttaagtcaaagaactgact 20611831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 9583918 - 9584086
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||| | ||||||||||||||||||||||||| || ||||| ||||||||  ||||||||| ||||||| ||||||| |||  || |            
T  9583918 caaagaacatcctcaaaataaaactcccagaccccaaaacccaagcagagccacaattcgaagagcgcctgaccgaaggatcgtgcgacttc-------- 9584009  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    | |||||||| |||||||||||| ||||||| || ||||||||| ||||||||||| |||||| |||||||||||||    
T  9584010 acaacctcgcaacctccgatccaccgaaagatcacaaaacaaaagcccaaaaaccatcttgagacaaagaactgact 9584086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 98 - 181
Target Start/End: Complemental strand, 45398927 - 45398844
Alignment:
Q  98 agcttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||| ||||||    
T  45398927 agcttccacaacctctcgacctccgatccatcgaaagagcataaaacaaaagcccaaaaaccaacttaaatcaaagagctgact 45398844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 172
Target Start/End: Original strand, 23328213 - 23328374
Alignment:
Q  4 ccaaagaacacca-tcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagctt 102  Q
    ||||||||||||| ||||||||||||||||||||  |||||| ||||||||||||||| ||||| ||| ||| ||| || || || | ||||       |    
T  23328213 ccaaagaacaccactcaaaataaaactcccagacttcaacacccaagctgagccacat-tcgaaaagctcctaaccgaatgaacaaggagct-------t 23328304  T
Q  103 ccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaa 172  Q
    ||| |||||| |||||||||||||| |||||||||| ||||||||| | |||||||||||||||| ||||    
T  23328305 ccacaacctctcgacctccgatccaccgaaagagcacaaaacaaaagctcaaaaaccaacttgagccaaa 23328374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 53248118 - 53247948
Alignment:
Q  5 caaagaacaccatcaaaataaaa-ctcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    ||||||||||  ||||||||||| ||| ||||||||||||| ||| ||||||||||| ||||||||||| | ||| ||||||||| || |||      ||    
T  53248118 caaagaacactctcaaaataaaaactctcagaccccaacacccaaactgagccacatttcgaagagcacataaccgaaggatcatacaacta------tc 53248025  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
       ||||||||||||||| ||||| |||||||||| || || |||| | |||||||||||||| |||||||| |||||    
T  53248024 acaaacctcgcgacctccaatccaccgaaagagcacaacac-aaaatctaaaaaccaacttgaatcaaagaattgact 53247948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 164
Target Start/End: Complemental strand, 31483100 - 31482949
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| | |||| ||||||| || ||||||||||  |||||||||||||| ||||||||||||| ||| ||||||||||||||||      ||     
T  31483100 caaagaacacccttaaaa-aaaactctcaaaccccaacacctaagctgagccacatttcgaagagcacctaaccgaaggatcatgcagcta------tca 31483008  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaactt 164  Q
      ||||||||||||||| ||||| |||||||||| || || ||| |||||||| ||||||    
T  31483007 caaacctcgcgacctccaatccaccgaaagagcacaacac-aaagcccaaaaatcaactt 31482949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 175
Target Start/End: Original strand, 40023449 - 40023599
Alignment:
Q  17 tcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttccataacctcgcga 116  Q
    ||||||||||||||||||||  |||||| | ||||||||||||| ||||| ||| ||| ||| || || |||||||||       |||| |||||| ||     
T  40023449 tcaaaataaaactcccagactacaacaccctagctgagccacat-tcgaaaagctcctaaccgaatgaacatgcagct-------tccacaacctcccgt 40023540  T
Q  117 cctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaa 175  Q
    |||| |||||| |||||||||| ||||||||| ||||||||||||||| || |||||||    
T  40023541 cctctgatccaccgaaagagcacaaaacaaaagcccaaaaaccaacttaagccaaagaa 40023599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 2394134 - 2394224
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagcta 95  Q
    |||| ||||||  |||||||||||||| |||||||||||| ||||||||||||||| | ||||||  ||| ||| ||||||||||||||||    
T  2394134 caaataacacctacaaaataaaactcctagaccccaacacccaagctgagccacattttgaagagatcctaaccgaaggatcatgcagcta 2394224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 21342666 - 21342603
Alignment:
Q  98 agcttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaa 161  Q
    |||||||| |||||| ||||||| ||||||||||||||||| ||||||||| || |||||||||    
T  21342666 agcttccacaacctctcgacctctgatccatcgaaagagcacaaaacaaaagcctaaaaaccaa 21342603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 164
Target Start/End: Original strand, 34475637 - 34475770
Alignment:
Q  24 aaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttccataacctcgcgacctccga 123  Q
    ||||||| || ||||||||||  |||||||| ||||| ||||||||||||| ||| ||||||||| ||||||      ||   ||||||||||||||| |    
T  34475637 aaaactctcataccccaacacctaagctgagtcacatttcgaagagcacctaaccgaaggatcatacagcta------tcacaaacctcgcgacctccaa 34475730  T
Q  124 tccatcgaaagagcataaaacaaaaacccaaaaaccaactt 164  Q
    |||| |||||||||| || || ||| |||||||| ||||||    
T  34475731 tccaccgaaagagcacaacac-aaagcccaaaaatcaactt 34475770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 30352322 - 30352358
Alignment:
Q  24 aaaactcccagaccccaacacacaagctgagccacat 60  Q
    |||||||| |||||||||||| |||||||||||||||    
T  30352322 aaaactccgagaccccaacacccaagctgagccacat 30352358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 1e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 387392 - 387221
Alignment:
Q  4 ccaaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||  || || |||||       ||||||    
T  387392 ccaaagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacctatcgaagagcacctgactgaatgaacatgc-------agcttc 387300  T
Q  104 cataacctcgcgacctccgatccatcgaaagagca-taaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    || ||||||| ||||||||||||| | ||||||||  ||||||||| | |||||||||||||||||||||||| |||||    
T  387299 caaaacctcgtgacctccgatccaccaaaagagcacaaaaacaaaagctcaaaaaccaacttgagtcaaagaattgact 387221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 39338729 - 39338898
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| ||||||||||||||||||||| |||||| ||||||||| ||||  ||||||||||||| ||| ||||||||| ||||||      ||     
T  39338729 caaagaacaccctcaaaataaaactcccagacctcaacacccaagctgagtcacaattcgaagagcacctaaccgaaggatcattcagcta------tca 39338822  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||||||| |||||||||| || || ||| ||||||||||||||||||||||||||||||||    
T  39338823 caaacctcgcgacctccgatccaccgaaagagcacaacac-aaagcccaaaaaccaacttgagtcaaagaactgact 39338898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 5 - 175
Target Start/End: Complemental strand, 10524317 - 10524155
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| || |||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||      ||     
T  10524317 caaagaacaccctccaaataaaactcccaaaccccaacacccaagctgagccacatatcgaagagcacctaaccgaaggatcatgcagcta------tca 10524224  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaa 175  Q
      |||||||||||||||||  || |||||||||| || || ||| ||||||||||||||||||||||||||    
T  10524223 caaacctcgcgacctccga-acaccgaaagagcacaacac-aaagcccaaaaaccaacttgagtcaaagaa 10524155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 4 - 181
Target Start/End: Complemental strand, 7874509 - 7874339
Alignment:
Q  4 ccaaagaaca-ccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagctt 102  Q
    |||||||||| || ||||||||||||||| ||||  |||||| ||||||||||||||| ||||| ||| ||| |||||| || || |       ||| ||    
T  7874509 ccaaagaacatccctcaaaataaaactccaagacttcaacacccaagctgagccacat-tcgaaaagctcctaaccaaatgaacaag-------tagttt 7874418  T
Q  103 ccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||| |||||| |||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||||||| ||||||    
T  7874417 ccacaacctctcgacctccgatccaccgaatgagcacaaaacaaaagcccaaaaaccaacttgagtcaaagagctgact 7874339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 17116743 - 17116912
Alignment:
Q  5 caaagaacaccatcaaaataaaa-ctcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    ||||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||||  |||||||||||| ||| | |||||| | || ||      ||    
T  17116743 caaagaacaccctcaaaataaaaactctcagaccccaacacccaagctgagccacattacgaagagcacctaaccgatggatcaagtagata------tc 17116836  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
       ||||||||||||||| ||| ||||||| |||| ||||| ||| || |||||||||| ||||||||| ||||||||    
T  17116837 acaaacctcgcgacctccaatctatcgaaaaagcacaaaac-aaagcctaaaaaccaacatgagtcaaa-aactgact 17116912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 5254387 - 5254319
Alignment:
Q  98 agcttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttga 166  Q
    |||||||| |||||| |||||||||||||| ||||| |||| ||||||||| ||| |||||||||||||    
T  5254387 agcttccacaacctctcgacctccgatccaccgaaaaagcacaaaacaaaagcccgaaaaccaacttga 5254319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 14405326 - 14405246
Alignment:
Q  101 ttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||||| |||| | |||| || |||||| |||||||||| ||||||||| |||||||||||||||||| |||||| ||||||    
T  14405326 ttccacaaccactcgacttctgatccaccgaaagagcacaaaacaaaagcccaaaaaccaacttgagccaaagagctgact 14405246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 14106474 - 14106536
Alignment:
Q  100 cttccataacctcgcgacctccgatccatcgaaagagcataaaa-caaaaacccaaaaaccaa 161  Q
    |||||| |||||| ||||||| |||||| |||||||||| |||| ||||||||||||||||||    
T  14106474 cttccacaacctctcgacctctgatccaccgaaagagcacaaaaacaaaaacccaaaaaccaa 14106536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 60
Target Start/End: Complemental strand, 7460894 - 7460837
Alignment:
Q  4 ccaaagaacacca-tcaaaataaaactcccagaccccaacacacaagctgagccacat 60  Q
    ||||||||||||  ||||||||||||||||||||  |||||| |||||||||||||||    
T  7460894 ccaaagaacacccctcaaaataaaactcccagacttcaacacccaagctgagccacat 7460837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 14106385 - 14106442
Alignment:
Q  4 ccaaagaacacca-tcaaaataaaactcccagaccccaacacacaagctgagccacat 60  Q
    ||||||||||||  |||||||||||||| |||||  |||||| |||||||||||||||    
T  14106385 ccaaagaacacccctcaaaataaaactctcagacttcaacacccaagctgagccacat 14106442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 186
Target Start/End: Complemental strand, 8255244 - 8255070
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||  |||||||||||| ||  | |||||| |||||||      ||     
T  8255244 caaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagccacattacgaagagcacctaactgatggatcaagcagcta------tca 8255151  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgacttctga 186  Q
      ||||||||||||||||||||| |||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||    
T  8255150 caaacctcgcgacctccgatccaccgaaagagcacaaaacaaag-cccaaaaaccaacttgagtcaaagaactgacttctga 8255070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 186
Target Start/End: Complemental strand, 8268662 - 8268488
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||  |||||||||||| ||  | |||||| |||||||      ||     
T  8268662 caaagaacaccctcaaaataaaactcacagaccctaacacccaagctgagccacattacgaagagcacctaactgatggatcaagcagcta------tca 8268569  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgacttctga 186  Q
      ||||||||||||||||||||| |||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||    
T  8268568 caaacctcgcgacctccgatccaccgaaagagcacaaaacaaag-cccaaaaaccaacttgagtcaaagaactgacttctga 8268488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 30167428 - 30167597
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| ||||||||||||||||| |||||||||| |||| || ||||||| ||||||||| | | ||| |||| |||||||||||      ||     
T  30167428 caaagaacaccctcaaaataaaactcccataccccaacacccaagttgggccacatttcgaagagcgcttaaccgaagggtcatgcagcta------tca 30167521  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||  ||| |||||||||| || || ||| |||||||| |||||||||||||||||| ||||    
T  30167522 taaacctcgcgacctccggaccaccgaaagagcacaacac-aaaccccaaaaatcaacttgagtcaaagaaccgact 30167597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 30964654 - 30964489
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| ||||||||||||||||||  ||    || ||||| | ||||||| ||||||||||||| ||| || |||||||||||||      ||     
T  30964654 caaagaacaccctcaaaataaaactcccagtacc----acccaagcagggccacatttcgaagagcacctaaccgaatgatcatgcagcta------tca 30964565  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||| ||| | |||||||| || |||||| ||||||||||||||||||||||||||| ||||    
T  30964564 caaacctcgcgacctccgaaccaccaaaagagcacaacacaaaa-cccaaaaaccaacttgagtcaaagaacggact 30964489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 35341288 - 35341373
Alignment:
Q  98 agcttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgacttc 183  Q
    |||||||| |||||| ||| |||||||||| |||||||||| |||||||||  ||||||||||||||||| |||||| ||||||||    
T  35341288 agcttccacaacctctcgaactccgatccaccgaaagagcacaaaacaaaaggccaaaaaccaacttgagccaaagagctgacttc 35341373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 4305941 - 4305855
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcag 92  Q
    |||||| |||| | ||||||||||||||| |||| || || |||| |||||||||| ||||||||||||| ||| |||||||||||||    
T  4305941 caaagatcaccctgaaaataaaactcccaaacccaaatacccaagttgagccacat-tcgaagagcacctcaccgaaggatcatgcag 4305855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 58
Target Start/End: Original strand, 8706008 - 8706061
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccac 58  Q
    ||||||||||| ||||||||||||||  |||||||||||| |||||||||||||    
T  8706008 caaagaacaccctcaaaataaaactcttagaccccaacacccaagctgagccac 8706061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 31050611 - 31050677
Alignment:
Q  98 agcttccataacctcgcgacctccgatccatcgaaagagca-taaaacaaaaacccaaaaaccaact 163  Q
    |||||||| |||||| ||||||||||||||  |||||||||  ||||||||| ||||||||||||||    
T  31050611 agcttccacaacctctcgacctccgatccactgaaagagcacaaaaacaaaagcccaaaaaccaact 31050677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 2825914 - 2825838
Alignment:
Q  98 agcttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaaga 174  Q
    |||||||| ||||||  ||||||||||||| |||||||| | |||| |||| |||||||||||  ||||| ||||||    
T  2825914 agcttccacaacctctagacctccgatccaccgaaagagtacaaaataaaagcccaaaaaccacattgagccaaaga 2825838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 5389287 - 5389454
Alignment:
Q  7 aagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttccat 106  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||| ||||| |||| |||||  |     ||     
T  5389287 aagaacaccctcaaaataaaactcccagaccccaacacccaagctgagccacatatcgaagagcacttaaccgaaggaccatgtagctaaca-----ca- 5389380  T
Q  107 aacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||||||||||||||||| ||| |||||||||| || || ||| ||||||||| ||||||||||||||||||||||    
T  5389381 aacctcgcgacctccgaaccaccgaaagagcacaacac-aaagcccaaaaacaaacttgagtcaaagaactgact 5389454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 24684355 - 24684510
Alignment:
Q  18 caaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttccataacctcgcgac 117  Q
    |||| |||||| | |||||||| |||  |||| |||||||||| ||||||||||||||||| |||||||||||| ||       |||| |||||||||||    
T  24684355 caaactaaaacacgcagaccccgacatccaagttgagccacatttcgaagagcacctgaccgaaggatcatgcatct-------tccacaacctcgcgac 24684447  T
Q  118 ctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgac 180  Q
    |||||||||| |||||||||| ||||||||| |||||||||||||| ||||||||||||||||    
T  24684448 ctccgatccaccgaaagagcacaaaacaaaagcccaaaaaccaactagagtcaaagaactgac 24684510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 31585623 - 31585793
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagacccc-aacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    ||||||||||| |||||||||||||| |||||||| ||||| |||||| |||||||| ||||||||||||| ||||||||||||| ||||||      ||    
T  31585623 caaagaacaccctcaaaataaaactctcagacccccaacacccaagcttagccacatttcgaagagcacctaaccaaaggatcatacagcta------tc 31585716  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
       ||||||||||||||||| ||| ||||| |||| || || ||| ||||||||||||||||||||||||||||||||    
T  31585717 acaaacctcgcgacctccgacccaccgaaatagcacaacac-aaagcccaaaaaccaacttgagtcaaagaactgact 31585793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 24449794 - 24449965
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    |||| |||||| ||||||||||||||| |||||||||||| ||||||||||| ||| ||||||||||||| ||| |||||||||||| |||      ||     
T  24449794 caaataacaccctcaaaataaaactcctagaccccaacacccaagctgagccgcatttcgaagagcacctaaccgaaggatcatgcaacta------tca 24449887  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgacttc 183  Q
      ||||||||||||||||||||| | |||||||| || || ||| ||||||||||||||| || |||||||||||||||    
T  24449888 caaacctcgcgacctccgatccaccaaaagagcacaacac-aaatcccaaaaaccaacttaagacaaagaactgacttc 24449965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 177
Target Start/End: Original strand, 46692683 - 46692848
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| || |||||||||| |||||||||||||| ||||||||||||||| ||||||||||| | |||  ||||| |||||||||      ||     
T  46692683 caaagaacaccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagagcacttaaccggaggataatgcagcta------tca 46692776  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaact 177  Q
      ||||||||||||||||| ||| |||||||||| || || ||| |||||||||||||||||| |||||||||    
T  46692777 caaacctcgcgacctccgaaccaccgaaagagcacaacac-aaagcccaaaaaccaacttgagccaaagaact 46692848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 95
Target Start/End: Complemental strand, 5459378 - 5459288
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagcta 95  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| || |||||||||| ||  ||||||||||||||||    
T  5459378 caaagaacaccatcaaaataaaacttccagaccccaacacccaagctgagccacatttcaaagagcacctaactgaaggatcatgcagcta 5459288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 30685800 - 30685937
Alignment:
Q  37 cccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttccataacctcgcgacctccgatccatcgaaagag 136  Q
    |||||||| |||||||||||||||||| | |||||||| ||||||||||||||||||||      ||   ||||||||||||||||| ||| ||||||||    
T  30685800 cccaacacccaagctgagccacatatcaaggagcacctaaccaaaggatcatgcagcta------tcacaaacctcgcgacctccgaaccaccgaaagag 30685893  T
Q  137 cataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    || || || ||| ||||||| ||||||||||||||||||||||||    
T  30685894 cacaacac-aaagcccaaaagccaacttgagtcaaagaactgact 30685937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 41920674 - 41920500
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaagg-----atcatgcagctactag 99  Q
    |||| |||||| ||||||||||||||| |||||||||||| |||||||||||||||   ||||||||||| ||  ||||     ||||||||||||        
T  41920674 caaaaaacaccctcaaaataaaactccaagaccccaacacccaagctgagccacatgatgaagagcacctaactgaaggttaggatcatgcagcta---- 41920579  T
Q  100 cttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||   ||||||||||||||||||||| |||||||||| || || ||| ||||||| ||||||||||||||||||||||||    
T  41920578 --tcacaaacctcgcgacctccgatccaccgaaagagcacaacac-aaagcccaaaatccaacttgagtcaaagaactgact 41920500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 181
Target Start/End: Original strand, 27031790 - 27031873
Alignment:
Q  98 agcttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    |||||||| |||||| | |||||||||||| |||||||||| ||||||||| ||| |||||||||||||| |||||| ||||||    
T  27031790 agcttccacaacctctcaacctccgatccaccgaaagagcacaaaacaaaatccctaaaaccaacttgagccaaagagctgact 27031873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 181
Target Start/End: Complemental strand, 24659059 - 24658977
Alignment:
Q  99 gcttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||||||| |||||| |||||||||||||| |||||||||| ||||| ||| ||||||||||||||| || |||||| ||||||    
T  24659059 gcttccacaacctctcgacctccgatccaccgaaagagcacaaaaccaaagcccaaaaaccaacttcagccaaagagctgact 24658977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 6764245 - 6764335
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagcta 95  Q
    ||||||||| | | ||||||||||||||||||||||  |  |||| |||||||||| ||||||||||||| ||| ||||| ||||||||||    
T  6764245 caaagaacatcctgaaaataaaactcccagaccccagtatccaagttgagccacatttcgaagagcacctaaccgaaggaccatgcagcta 6764335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 7857784 - 7857718
Alignment:
Q  98 agcttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaactt 164  Q
    |||||||| |||||| ||||| |||||||| |||||||||| |||||||||  ||||||||||||||    
T  7857784 agcttccacaacctctcgaccaccgatccaccgaaagagcacaaaacaaaaggccaaaaaccaactt 7857718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 181
Target Start/End: Original strand, 46814426 - 46814500
Alignment:
Q  107 aacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    |||||| |||| ||||||||| |||||||||| ||||||||| || ||||||||||||||| |||| | ||||||    
T  46814426 aacctctcgacatccgatccaccgaaagagcacaaaacaaaagccaaaaaaccaacttgagccaaaaagctgact 46814500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 19598720 - 19598684
Alignment:
Q  145 aaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    |||||||||||| | ||||||||||||||||||||||    
T  19598720 aaaaacccaaaatcaaacttgagtcaaagaactgact 19598684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 36631041 - 36630886
Alignment:
Q  18 caaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttccataacctcgcgac 117  Q
    |||| |||||| | |||||||| |||  |||| |||||||||| ||||||||||||||||| ||||||||||||||| |       || |||||||||||    
T  36631041 caaactaaaacacgcagacccccacatccaagttgagccacatttcgaagagcacctgaccgaaggatcatgcagctcc-------cacaacctcgcgac 36630949  T
Q  118 ctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgac 180  Q
    ||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||||    
T  36630948 ctccgatccatcgaaagagcacaaaacaaaagcccaaaaacaaactagagtcaaagaactgac 36630886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 31207226 - 31207395
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| ||||||||||||||||| || ||||||| ||||||||||||||| ||||||||||||| ||| |||| |||| ||||||      ||     
T  31207226 caaagaacaccctcaaaataaaactcccatactccaacacccaagctgagccacatttcgaagagcacctaaccgaagggtcattcagcta------tca 31207319  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||||||| ||||| |||| || || ||| ||||||| ||||||||||||||||||||||||    
T  31207320 caaacctcgcgacctccgatccaccgaaaaagcacaacac-aaatcccaaaatccaacttgagtcaaagaactgact 31207395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 37986722 - 37986891
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| || ||||||||||||||||||  ||||| ||||||||||||||| ||||||||||||| ||| |||||||| |||||||      ||     
T  37986722 caaagaacaccctccaaataaaactcccagaccgaaacacccaagctgagccacatttcgaagagcacctaaccgaaggatcaggcagcta------tca 37986815  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||| ||| |||||||||| || || ||| | ||||||||||||||||||||||||||||||    
T  37986816 caaacctcgcgacctccgaaccaccgaaagagcacaacac-aaagcacaaaaaccaacttgagtcaaagaactgact 37986891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 20138644 - 20138474
Alignment:
Q  5 caaagaacaccatcaaaa-taaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||| | | ||||| ||||||||||||| ||| ||||||||||||||||      ||    
T  20138644 caaagaacaccctcaaaaataaaactcccagaccccaacacccaagccgggtcacatttcgaagagcacctaaccgaaggatcatgcagcta------tc 20138551  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
       ||||||||||||||||||||| |||||||||| || || ||| ||||||||||||| | ||||||||||||||||    
T  20138550 acaaacctcgcgacctccgatccaccgaaagagcacaacac-aaagcccaaaaaccaacataagtcaaagaactgact 20138474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 24995258 - 24995428
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagacccc-aacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    ||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||| || ||||||||||||| ||| ||||||||||||||||      ||    
T  24995258 caaagaacaccctcaaaataaaactcctagacccccaacacccaagctgagccatatttcgaagagcacctaaccgaaggatcatgcagcta------tc 24995351  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
       |||||||||||||| || |||  ||||||||| || || ||| ||||||||||||||||||||||||||||||||    
T  24995352 acaaacctcgcgacctctgacccactgaaagagcacaacac-aaagcccaaaaaccaacttgagtcaaagaactgact 24995428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 9519717 - 9519547
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagacccc-aacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttc 103  Q
    ||||||||||| |||||||||||||| |||||||| ||||| |||||||||||| || ||||||||||||| ||| || |||||||||||||      ||    
T  9519717 caaagaacaccctcaaaataaaactctcagacccccaacacccaagctgagccatatttcgaagagcacctaaccgaatgatcatgcagcta------tc 9519624  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
       ||| |||| |||||||| ||| |||||||||| || || ||| ||||||||||||||||||||||||||||||||    
T  9519623 acaaacttcgcaacctccgacccaccgaaagagcacaacac-aaagcccaaaaaccaacttgagtcaaagaactgact 9519547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 12898139 - 12898307
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| ||||||||||||||  |||||||||||| ||||||||||||||| ||||||||||||| ||| |||||||| |||||||      ||     
T  12898139 caaagaacaccctcaaaataaaactctaagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggatca-gcagcta------tca 12898231  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||| |||||||||||||| || || ||| ||| ||||||||||||||| | | ||||||||    
T  12898232 caaacctcgcgacctccgaaccatcgaaagagcacaacac-aaagccccaaaaccaacttgagttagataactgact 12898307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 32066159 - 32066328
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| || ||||||||||| ||||||||||||| |||||||| |||||| || ||||||| || ||| || |||||||||||||      ||     
T  32066159 caaagaacaccctccaaataaaactctcagaccccaacacccaagctgaaccacatttcaaagagcatctaaccgaatgatcatgcagcta------tca 32066252  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      |||||||| ||||| || ||| |||||||||| || || ||| |||||||||||||| |||||||||| ||||||    
T  32066253 caaacctcgcaacctctgaaccaccgaaagagcacaacac-aaagcccaaaaaccaactggagtcaaagagctgact 32066328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 181
Target Start/End: Original strand, 34388870 - 34389038
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagct-tc 103  Q
    ||||||||||| |||||||||||||| || |||||||||| |||||||||||||||   ||||| ||||| ||  |||||||        ||||||| ||    
T  34388870 caaagaacaccctcaaaataaaactctcataccccaacacccaagctgagccacatgatgaagaacacctaactgaaggatc--------actagctatc 34388961  T
Q  104 cataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
       |||||| |||||| ||||||| ||||| |||| || || ||| ||||||||||||||||||||||||||||||||    
T  34388962 acaaacctcacgacctacgatccaccgaaatagcacaacac-aaagcccaaaaaccaacttgagtcaaagaactgact 34389038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 22773699 - 22773632
Alignment:
Q  22 ataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatg 89  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||||||||||| ||  ||||||||||    
T  22773699 ataaaactcccagaccccaacacccaaactgagccacatttcgaagagcacctaacagaaggatcatg 22773632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 95
Target Start/End: Original strand, 41893266 - 41893355
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagcta 95  Q
    ||||||||||| | |||||| |||||||||||| |||||| ||||||||||||||| |||||||| |||| |   ||||||||||||||||    
T  41893266 caaagaacaccctgaaaatagaactcccagacctcaacacccaagctgagccacatttcgaagagtacct-atagaaggatcatgcagcta 41893355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 15821332 - 15821412
Alignment:
Q  101 ttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||||| |||||| ||||||| ||||||  ||||||||| ||||||||| ||||||||||||| | ||||||||| ||||||    
T  15821332 ttccacaacctctcgacctctgatccactgaaagagcacaaaacaaaagcccaaaaaccaacataagtcaaagagctgact 15821412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 181
Target Start/End: Original strand, 16457366 - 16457494
Alignment:
Q  46 caagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttccataacctcgcgacctccgatccatcgaaagagcataaaaca 145  Q
    ||||||||||||||| || |||||||||| |||| | |||||||||||||      ||   |||||| |||| ||||| ||| |||||||||| || |||    
T  16457366 caagctgagccacatttcaaagagcacctaaccacaagatcatgcagcta------tcacaaacctcacgacatccgaaccaccgaaagagcacaacaca 16457459  T
Q  146 aaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||  || |||||||||||||||||||||||||||||    
T  16457460 aag-cctaaaaaccaacttgagtcaaagaactgact 16457494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 177
Target Start/End: Original strand, 38577740 - 38577819
Alignment:
Q  98 agcttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaact 177  Q
    |||||||| || ||| ||||||| |||||| |||||||||| |||||||||  |||||||||||||| |  |||||||||    
T  38577740 agcttccacaaactctcgacctctgatccaccgaaagagcacaaaacaaaagtccaaaaaccaacttaaaccaaagaact 38577819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 12198022 - 12198102
Alignment:
Q  100 cttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||||||| ||||| ||||||||||||||| |||||| ||| ||| |||| | ||||| | |||||||| |||||||||||||    
T  12198022 cttccatcacctctcgacctccgatccattgaaagaacatcaaa-aaaagctcaaaaccaaacttgagccaaagaactgact 12198102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 181
Target Start/End: Original strand, 12442450 - 12442530
Alignment:
Q  100 cttccataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
    ||||||| ||||| ||||||||||||||| |||||| ||| ||| |||| | ||||| | |||||||| |||||||||||||    
T  12442450 cttccatcacctctcgacctccgatccattgaaagaacatcaaa-aaaagctcaaaaccaaacttgagccaaagaactgact 12442530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 5923 - 5753
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    |||| |||||| ||||||||||||||||||| |||||||| |||||||||||||||  |||||||||||| ||| |||||||| | |||||      ||     
T  5923 caaaaaacaccctcaaaataaaactcccagatcccaacacccaagctgagccacattacgaagagcacctaaccgaaggatcaagtagcta------tca 5830  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||| ||||||||||||| | |||||||||| ||||  ||| ||||||||||||| ||||||||||||||||||    
T  5829 caaaccttgcgacctccgatctaccgaaagagcacaaaaacaaagcccaaaaaccaacctgagtcaaagaactgact 5753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 181
Target Start/End: Complemental strand, 3117710 - 3117541
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttcc 104  Q
    ||||||||||| |  ||||||||||||||||||||||||| |||| |||||||||| ||||||||||| | | | |||||||||||| |||      ||     
T  3117710 caaagaacaccctataaataaaactcccagaccccaacacccaagttgagccacatttcgaagagcacataatcgaaggatcatgcaacta------tca 3117617  T
Q  105 ataacctcgcgacctccgatccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaactgact 181  Q
      ||||||||||||||||| |||   |||||||| || || ||| ||||||||||||||||||||||||||||||||    
T  3117616 caaacctcgcgacctccgaaccacataaagagcacaacac-aaagcccaaaaaccaacttgagtcaaagaactgact 3117541  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 10542049 - 10541967
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatca 87  Q
    ||||||| ||| || |||||||||| |||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||||    
T  10542049 caaagaataccctccaaataaaacttccagaccccaacacccaagctgagccacatttcgaagagcacctaaccgaaggatca 10541967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 14663294 - 14663218
Alignment:
Q  5 caaagaacaccatcaaaataaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaa 81  Q
    ||||||||| | ||||||||||||||||| |||||||||  ||||| ||||||||| ||||||| || || ||||||    
T  14663294 caaagaacatcctcaaaataaaactcccaaaccccaacatccaagccgagccacatttcgaagaacatctaaccaaa 14663218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 35655 - 35799
Alignment:
Q  24 aaaactcccagaccccaacacacaagctgagccacatatcgaagagcacctgaccaaaggatcatgcagctactagcttccataacctcgcgacctccga 123  Q
    |||||||||| |||||||||| ||||||||||| ||| ||||||||||||| ||| | ||||||||||||||      ||   || |||| |||||||||    
T  35655 aaaactcccacaccccaacacccaagctgagcctcatttcgaagagcacctaaccgatggatcatgcagcta------tcacaaatctcgtgacctccga 35748  T
Q  124 tccatcgaaagagcataaaacaaaaacccaaaaaccaacttgagtcaaagaa 175  Q
    |||| |||||||||| || |  ||| ||||||||||||||| ||||||||||    
T  35749 tccaccgaaagagcacaaca-taaagcccaaaaaccaacttaagtcaaagaa 35799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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