View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_41 (Length: 249)
Name: NF18963_low_41
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_41 |
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| [»] chr1 (9 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 10983968 - 10984199
Alignment:
| Q |
18 |
aatcctaccaatggtgacaacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10983968 |
aatcctaccaatggtgacaacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgt |
10984067 |
T |
|
| Q |
118 |
cctttaaaaacagttccataacctccattgcctaattttgttttgaattgttctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10984068 |
cctttaaaaacagttccataacctccattgcctaattttgttttgaattgttctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgc |
10984167 |
T |
|
| Q |
218 |
tattgtcactcctcagaaaatcttcaatgcca |
249 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
10984168 |
tattgtcactcctcagaaaatcttcaatgcca |
10984199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 18 - 227
Target Start/End: Original strand, 10915043 - 10915252
Alignment:
| Q |
18 |
aatcctaccaatggtgacaacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgt |
117 |
Q |
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||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||| ||| | |||||| |
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| T |
10915043 |
aatcctaccgatggtgacaacttcattgataaaatcttgaccgttggacttggctttgtccaataatttaactgctacaagacgaccactttgaagttgt |
10915142 |
T |
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| Q |
118 |
cctttaaaaacagttccataacctccattgcctaattttgttttgaattgttctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgc |
217 |
Q |
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||||| ||||||| ||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10915143 |
cctttgaaaacagatccataacctccattgcctaattttgttttgaactggtgtgttatcttttttatgtctttgtaagagtaccttataggcatgatgt |
10915242 |
T |
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| Q |
218 |
tattgtcact |
227 |
Q |
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|||||||||| |
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| T |
10915243 |
tattgtcact |
10915252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 11011344 - 11011568
Alignment:
| Q |
18 |
aatcctaccaatggtgacaacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgt |
117 |
Q |
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||||||||||||||| |||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
11011344 |
aatcctaccaatggtagcaacttcattgacaaaatcttgatcactggacttggctttgtccaataatttgactgctacaagacgaccacttcgaagttgt |
11011443 |
T |
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| Q |
118 |
cctttaaaaacagttccataacctccattgcctaattttgttttgaattgttctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgc |
217 |
Q |
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||||| ||||||| |||||| ||||||||||||| |||||| ||||||||||| |||||||||||||| ||| |||||||||||||||| || ||||||| |
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| T |
11011444 |
cctttgaaaacagatccataccctccattgcctagttttgtcttgaattgttcggttatcttttttatatctctgtaagagtaccttatagggatgatgc |
11011543 |
T |
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| Q |
218 |
tattgtcactcctcagaaaatcttc |
242 |
Q |
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|||||||||| || ||||||||||| |
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| T |
11011544 |
tattgtcactactaagaaaatcttc |
11011568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 11004678 - 11004447
Alignment:
| Q |
18 |
aatcctaccaatggtgacaacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgt |
117 |
Q |
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||||||||||||||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||||| |||||||||| | | ||||| |||| | |
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| T |
11004678 |
aatcctaccaatggtagtaacttcattgacaaaatcttgaccgttggtcttggctttgtccaataatttgaccgctacaagacgatcacttcgaagtttt |
11004579 |
T |
|
| Q |
118 |
cctttaaaaacagttccataacctccattgcctaattttgttttgaattgttctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgc |
217 |
Q |
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|||||||||||||||||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
11004578 |
cctttaaaaacagttccataacctccgttgcctagttttatcttgaattgttctgttatcttttttatgtctttgtaagagtaccttataggcatgatgc |
11004479 |
T |
|
| Q |
218 |
tattgtcactcctcagaaaatcttcaatgcca |
249 |
Q |
| |
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|||| ||||| | ||||||||||| |||||| |
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| T |
11004478 |
tattatcactgcgtagaaaatcttcgatgcca |
11004447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 19 - 249
Target Start/End: Original strand, 11033636 - 11033866
Alignment:
| Q |
19 |
atcctaccaatggtgacaacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgtc |
118 |
Q |
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|||||||||||||| |||||||||||| |||||| || | |||||||||||| | |||||||||||||||||||| |||| ||| ||||| ||||||| |
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| T |
11033636 |
atcctaccaatggtagcaacttcattgacaaaatctcgatcgttggacttggctctatccaataatttgactgctaccagacgaccacttcgaagttgtc |
11033735 |
T |
|
| Q |
119 |
ctttaaaaacagttccataacctccattgcctaattttgttttgaattgttctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgct |
218 |
Q |
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|||||||||| | |||||||||||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||| ||||| || ||||||||||| |
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| T |
11033736 |
ctttaaaaacggatccataacctccattgcctagttttgtcttgaattgttcagttatcctttttatgtctttgtaagaatacctaataggcatgatgct |
11033835 |
T |
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| Q |
219 |
attgtcactcctcagaaaatcttcaatgcca |
249 |
Q |
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| T |
11033836 |
attgtcactacgtagaaaatcttcgatgcca |
11033866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 11008182 - 11008406
Alignment:
| Q |
18 |
aatcctaccaatggtgacaacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgt |
117 |
Q |
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|
||||||||||||||| |||||||||||| |||||| || | ||||||||||| ||||||||||||||||||||||||||| ||| ||||| |||||| |
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| T |
11008182 |
aatcctaccaatggtagcaacttcattgacaaaatctcgatcgttggacttggcactgtccaataatttgactgctacaagacgaccacttcgaagttgt |
11008281 |
T |
|
| Q |
118 |
cctttaaaaacagttccataacctccattgcctaattttgttttgaattgttctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgc |
217 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||| |||||| |||| | | | |||||||||||||| |||||||||||||||||||| || ||||||| |
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| T |
11008282 |
cctttgaaaacagatccataacctccattgcctagttttgtcatgaaatttccggttatcttttttatctctttgtaagagtaccttatagggatgatgc |
11008381 |
T |
|
| Q |
218 |
tattgtcactcctcagaaaatcttc |
242 |
Q |
| |
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|||| ||||| || ||||||||||| |
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| T |
11008382 |
tattatcactacttagaaaatcttc |
11008406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 10903880 - 10904110
Alignment:
| Q |
18 |
aatcctaccaatggtgacaacttcattgatgaaatcttgaccattggacttggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgt |
117 |
Q |
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|
||||||||| ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||| |||||| ||| ||||| |||||| |
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| T |
10903880 |
aatcctaccgatggtagcaacttcattgataaaatcttgaccattggatttggctttgtccaataatttcaccgctgcaagacgaccacttcgaagttgt |
10903979 |
T |
|
| Q |
118 |
cctttaaaaacagttccataacctccattgcctaattttgttttgaattgttctgttatcttttttatgtctttgtaagagtaccttatcggcatgatgc |
217 |
Q |
| |
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||||| | |||| ||||| |||||||| ||||||||||| |||||||| || ||||| ||||| ||||||||||| ||||| ||||| ||||||||| |
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| T |
10903980 |
cctttgtagacagagccatagcctccattccctaattttgtcttgaattgctcagttatttttttgatgtctttgtatgagtatcttataggcatgatgt |
10904079 |
T |
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| Q |
218 |
tattgtcactcctcagaaaatcttcaatgcc |
248 |
Q |
| |
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||||| ||| |||||||||||| ||||| |
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| T |
10904080 |
cattgttactgtgcagaaaatcttcgatgcc |
10904110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 11028225 - 11028129
Alignment:
| Q |
63 |
ggacttggctttgtccaataatttgactgctacaagacaaccgcttcgtagttgtcctttaaaaacagttccataacctccattgcctaattttgtt |
159 |
Q |
| |
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|||||||| ||||||||||||||| ||||||||||| || || |||| ||||||||||| ||||||| |||||||||||| | |||| ||||||| |
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| T |
11028225 |
ggacttggttttgtccaataattttactgctacaagtcagccatttcgaagttgtcctttgaaaacagacccataacctccacttcctagttttgtt |
11028129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 11028132 - 11028077
Alignment:
| Q |
171 |
tgttatcttttttatgtctttgtaagagtaccttatcggcatgatgctattgtcac |
226 |
Q |
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||||||||| |||||||||||| | |||||||||| ||||||||||||||||||| |
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| T |
11028132 |
tgttatcttatttatgtctttgaagaagtaccttattggcatgatgctattgtcac |
11028077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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