View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18963_low_46 (Length: 239)
Name: NF18963_low_46
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_46 |
 | |
|
| [»] chr6 (25 HSPs) |
| |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| | |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 25)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 4298560 - 4298339
Alignment:
| Q |
18 |
aattagacctttctcaatcagcgtacggaagtacaaagctaccaagaaggaacatgcactaactggacaaaagagaacaattgggagtgcatgttcttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
4298560 |
aattagacctttctcaatcagcgtacgaaagtgcaaagctaccaagaaggaacatgcactagctggacaaaagagaataattgggagtgcatgttcttcc |
4298461 |
T |
|
| Q |
118 |
gcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||| || ||| |||||||||||||||||| |
|
|
| T |
4298460 |
gcagcttgtatggtaaatgacattaaaaaatcagcaactaagcaagtaactggtggtacaagaccagcagtggcagaatcacgaagtttagcaagaagtt |
4298361 |
T |
|
| Q |
218 |
gaccaaagggctgaaggaagtt |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4298360 |
caccaaagggctgaaggaagtt |
4298339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 4627217 - 4627437
Alignment:
| Q |
19 |
attagacctttctcaatcagcgtacggaagtacaaagctaccaagaaggaacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcag |
118 |
Q |
| |
|
||||||||||| |||| ||| ||||| |||| |||| |||||| |||||||||||| | | |||||||| |||||||||||||||||||||||| |
|
|
| T |
4627217 |
attagacctttttcaaacagtgtacgaaagtgcaaaatagacaagaaagaacatgcactagaagtagaaaagagagcaattgggagtgcatgttcttcag |
4627316 |
T |
|
| Q |
119 |
cagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagttg |
218 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
4627317 |
cagcttgtatggtaaatgacattaaacaatctgaaactaagcaagtaactggtgcaacaagaccagcagtggctgagtcatgaagtttagcaagaagttc |
4627416 |
T |
|
| Q |
219 |
accaaagggctgaaggaagtt |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4627417 |
accaaagggctgaaggaagtt |
4627437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 239
Target Start/End: Complemental strand, 4259237 - 4259017
Alignment:
| Q |
19 |
attagacctttctcaatcagcgtacggaagtacaaagctaccaagaaggaacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcag |
118 |
Q |
| |
|
||||||||||| |||| ||| ||||| |||| ||| | |||||||| || ||||||| ||||| | |||| |||||||||||||||||| ||||||| |
|
|
| T |
4259237 |
attagacctttttcaaacagtgtacgaaagtgtaaaacagacaagaaggtacttgcactagctggagagaagaaaacaattgggagtgcatgctcttcag |
4259138 |
T |
|
| Q |
119 |
cagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagttg |
218 |
Q |
| |
|
|||||||||| |||||||||| || |||||||||||||||||||||| |||||||||| ||| | |||||| ||||| ||||||||||||||||||| |
|
|
| T |
4259137 |
cagcttgtatactaaatgacatgtaacaatcagaaactaagcaagtaacaggtggaacaataccagtagtggctgagtcttgaagtttagcaagaagttc |
4259038 |
T |
|
| Q |
219 |
accaaagggctgaaggaagtt |
239 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4259037 |
accaaagggctgaaggaagtt |
4259017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 19 - 227
Target Start/End: Original strand, 4623374 - 4623582
Alignment:
| Q |
19 |
attagacctttctcaatcagcgtacggaagtacaaagctaccaagaaggaacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcag |
118 |
Q |
| |
|
|||||||||||||||| ||| ||| | |||| ||| | |||||||| || ||||||| |||| | |||| |||||||||||||||||| ||||||| |
|
|
| T |
4623374 |
attagacctttctcaaacagtgtatgaaagtgtaaaacagacaagaaggtacttgcactagctggggagaagaaaacaattgggagtgcatgctcttcag |
4623473 |
T |
|
| Q |
119 |
cagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagttg |
218 |
Q |
| |
|
|||||||||| ||||||||||| || |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||| |
|
|
| T |
4623474 |
cagcttgtattgtaaatgacatgtaacaatcggaaactaagcaagtaactggtggaacaagaccagcagtggcagagtcatgaagttttgcaagaagttc |
4623573 |
T |
|
| Q |
219 |
accaaaggg |
227 |
Q |
| |
|
|| |||||| |
|
|
| T |
4623574 |
acaaaaggg |
4623582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 4255700 - 4255543
Alignment:
| Q |
19 |
attagacctttctcaatcagcgtacggaagtacaaagctaccaagaaggaacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcag |
118 |
Q |
| |
|
||||||||||||| || ||| |||||||||| ||||| ||||| ||||||| || |||| ||| ||||||||||||||||||||| ||||||| |
|
|
| T |
4255700 |
attagacctttcttaaacagtgtacggaagtgtaaagcagagaagaacatacatgcaatatctggggaaaggagaacaattgggagtgcatgctcttcag |
4255601 |
T |
|
| Q |
119 |
cagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaac |
176 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
4255600 |
cagcttgtatggtaaatgacatgtaacaatcagaaactaagcaagtaactagtggaac |
4255543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 4471033 - 4471203
Alignment:
| Q |
68 |
aacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaac |
167 |
Q |
| |
|
||||||| || || ||| |||||||||| |||||||||||| ||||||||||||| | || ||||||| ||| || ||||||||| || ||||||||| |
|
|
| T |
4471033 |
aacatgcgctgaccggagaaaagagaacgattgggagtgcacgttcttcagcagcatctactgtaaatggcatgtaacaatcagaaattatgcaagtaac |
4471132 |
T |
|
| Q |
168 |
tggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagttgaccaaagggctgaaggaagt |
238 |
Q |
| |
|
||| || | |||||| |||||||| ||| ||| |||| ||| |||||||| ||||||||| |||||||||| |
|
|
| T |
4471133 |
tggagggataagaccagcagtggcagaggcatcaagtctagtaagaagttcaccaaagggttgaaggaagt |
4471203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 4575571 - 4575720
Alignment:
| Q |
68 |
aacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaac |
167 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||||| ||||||||||||||||| | || ||||||| ||| | ||||||||||||||||||| || |
|
|
| T |
4575571 |
aacatgcactacatggggaaaaaagaacaattgggagggcatgttcttcagcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgac |
4575670 |
T |
|
| Q |
168 |
tggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagtt |
217 |
Q |
| |
|
||| || | |||||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
4575671 |
tggggggataagaccagcagtggcagagtcttgaagtttagcaagaagtt |
4575720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 214
Target Start/End: Complemental strand, 4489191 - 4489063
Alignment:
| Q |
86 |
aaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | || ||||||| ||| ||||||||||||||||||||||||| || | |||||| || |
|
|
| T |
4489191 |
aaaagagaacaattgggagtgcatgttcttcagcagcatctactgtaaatgccatattgcaatcagaaactaagcaagtaactggagggataagaccagc |
4489092 |
T |
|
| Q |
186 |
agtggccgagtcatgaagtttagcaagaa |
214 |
Q |
| |
|
||| || ||||||| |||||||||||||| |
|
|
| T |
4489091 |
agtagcagagtcattaagtttagcaagaa |
4489063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 86 - 217
Target Start/End: Original strand, 4561796 - 4561927
Alignment:
| Q |
86 |
aaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggc |
185 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||| || ||||||| ||| | ||||||||||||||||||| ||||| || | |||||| || |
|
|
| T |
4561796 |
aaaaaagaacaactgggagtgcatgttcttcagcagcagctactgtaaatggcatgtagcaatcagaaactaagcaagtgactggggggataagaccagc |
4561895 |
T |
|
| Q |
186 |
agtggccgagtcatgaagtttagcaagaagtt |
217 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| |
|
|
| T |
4561896 |
agtggcagagtcttgaagtttagcaagaagtt |
4561927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 68 - 214
Target Start/End: Original strand, 4481981 - 4482127
Alignment:
| Q |
68 |
aacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaac |
167 |
Q |
| |
|
|||||||||| || || ||||||||||||||||||||||||||||||| ||||| | || ||||||| ||| | ||||||||||||||||||| || |
|
|
| T |
4481981 |
aacatgcactgaccggggaaaagagaacaattgggagtgcatgttcttcggcagcatctactgtaaatggcatgtagcaatcagaaactaagcaagtgac |
4482080 |
T |
|
| Q |
168 |
tggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaa |
214 |
Q |
| |
|
||| || | || ||| |||||||| || |||||||||||||| |||| |
|
|
| T |
4482081 |
tggggggataataccagcagtggcagattcatgaagtttagccagaa |
4482127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 90 - 225
Target Start/End: Complemental strand, 4503283 - 4503148
Alignment:
| Q |
90 |
gagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggcagtg |
189 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | || | ||||| ||| ||||||||||||||||||||||||| || | |||||| |||||| |
|
|
| T |
4503283 |
gagaacaattgggagtgtatgttcttcagcagcatatactggaaatggcatgttgcaatcagaaactaagcaagtaactggagggataagaccagcagtg |
4503184 |
T |
|
| Q |
190 |
gccgagtcatgaagtttagcaagaagttgaccaaag |
225 |
Q |
| |
|
|| ||||||| ||||||| |||||| || ||||||| |
|
|
| T |
4503183 |
gcagagtcattaagtttaacaagaaattcaccaaag |
4503148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 4581131 - 4581301
Alignment:
| Q |
69 |
acatgcactaactggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaact |
168 |
Q |
| |
|
||||||||| |||||| ||||| ||||| |||| || | ||||||||||||||||||| ||||| |||| | ||||||||||| |||||||||| |
|
|
| T |
4581131 |
acatgcactggctggactaaagaaaacaacagggattgaaagttcttcagcagcttgtattgtaaaatacatgctattatcagaaactatgcaagtaact |
4581230 |
T |
|
| Q |
169 |
ggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagttgaccaaagggctgaaggaagtt |
239 |
Q |
| |
|
|| || |||||||| | |||||| ||||||| |||| |||||||||||| || ||| || || |||||||| |
|
|
| T |
4581231 |
ggagggacaagaccagaagtggcagagtcattaagtctagcaagaagttcacaaaaaggttgtaggaagtt |
4581301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 4565174 - 4565263
Alignment:
| Q |
88 |
aagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaaca |
177 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4565174 |
aagataacaattggtagtgcaaattcttcagcagcttgtatagtaaagctcataaaataatcagaaactaagcaagtaactggtggaaca |
4565263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 4603256 - 4603344
Alignment:
| Q |
89 |
agagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaaca |
177 |
Q |
| |
|
|||||||| |||| |||||| |||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
4603256 |
agagaacatttggaagtgcaaattcttcagcagcttgtatagtaaagctcatacaagaatcagaaactaagcaagtaactggtggaaca |
4603344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 4618447 - 4618535
Alignment:
| Q |
89 |
agagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaaca |
177 |
Q |
| |
|
|||||||| |||||||| || |||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
4618447 |
agagaacatttgggagttcaaattcttcagcagcttgtatagtaaagctcatacaacaatcagaaactaagcaagtaactggtggaaca |
4618535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 59 - 217
Target Start/End: Original strand, 3173110 - 3173268
Alignment:
| Q |
59 |
ccaagaaggaacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaa |
158 |
Q |
| |
|
|||||||| ||||||||||| || |||| |||||||||||||| ||||||||||||||| | | || ||||||| ||| | |||| ||||| || |
|
|
| T |
3173110 |
ccaagaagaaacatgcactacacggcgaaaatagaacaattgggagagcatgttcttcagcaacatctactgtaaatggcatatagcaatcggaaacaaa |
3173209 |
T |
|
| Q |
159 |
gcaagtaactggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagtt |
217 |
Q |
| |
|
|||||||||||| || | |||||| ||||| || || || ||||||||||||| ||||| |
|
|
| T |
3173210 |
gcaagtaactggaggtataagaccagcagttgcagaatcgtgaagtttagcaaaaagtt |
3173268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 4266040 - 4265898
Alignment:
| Q |
97 |
attgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggcagtggccgagt |
196 |
Q |
| |
|
|||||||||||||||||||| ||||| | ||| ||||| | ||| || |||| ||||| |||||||||| |||||||| || ||| || |||| || | |
|
|
| T |
4266040 |
attgggagtgcatgttcttccgcagcatctattgtaaaaggcatgtaacaatcggaaaccaagcaagtaattggtggaataaaaccatcattggcagatt |
4265941 |
T |
|
| Q |
197 |
catgaagtttagcaagaagttgaccaaagggctgaaggaagtt |
239 |
Q |
| |
|
||||||| ||| |||||||| | ||||||| ||||||||||| |
|
|
| T |
4265940 |
gatgaagtctagtaagaagttcatcaaagggttgaaggaagtt |
4265898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 4507049 - 4507141
Alignment:
| Q |
90 |
gagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagacc |
182 |
Q |
| |
|
|||||||||||| |||||| |||||||||| || |||||||||||||| | | |||||||||||||||||||||| || || |||||||| |
|
|
| T |
4507049 |
gagaacaattggaagtgcaaattcttcagcaactcttatggtaaatgacaagagacaatcagaaactaagcaagtaacaggaggcacaagacc |
4507141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 69 - 217
Target Start/End: Original strand, 4586749 - 4586897
Alignment:
| Q |
69 |
acatgcactaactggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaact |
168 |
Q |
| |
|
||||||||| ||||| ||||| ||||| |||||||| | ||||||||||||||||||| ||||| ||||| || ||||||||||| ||||| ||| |
|
|
| T |
4586749 |
acatgcactggctggattaaagaaaacaagtgggagtgaaagttcttcagcagcttgtatagtaaaggacatggtaatatcagaaactatacaagtgact |
4586848 |
T |
|
| Q |
169 |
ggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagtt |
217 |
Q |
| |
|
|| || | |||||| | || || ||||||| |||| |||||||||||| |
|
|
| T |
4586849 |
ggagggataagaccagatgttgcagagtcattaagtctagcaagaagtt |
4586897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 4462326 - 4462497
Alignment:
| Q |
68 |
aacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaac |
167 |
Q |
| |
|
|||||||||| || || |||||||||| |||||||||||| ||| |||||| || | | ||||||| ||| || |||||||||||| ||||||||| |
|
|
| T |
4462326 |
aacatgcactgaccggggaaaagagaacgattgggagtgcacgttgttcagcggcatccactgtaaatggcatgtaacaatcagaaactatgcaagtaac |
4462425 |
T |
|
| Q |
168 |
tggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagttgaccaaagggctgaaggaagtt |
239 |
Q |
| |
|
|| || | |||| |||||||||| ||| ||| |||| | | |||||||| || |||||| |||| |||||| |
|
|
| T |
4462426 |
cggagggataagatcggcagtggcagaggcatcaagtcttgtaagaagttcactaaagggttgaatgaagtt |
4462497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 217
Target Start/End: Original strand, 4558283 - 4558390
Alignment:
| Q |
110 |
gttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggcagtggccgagtcatgaagtttagc |
209 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| || ||||||||||| |||||||||||| || |||||||| | || || ||||||| ||| |||| |
|
|
| T |
4558283 |
gttcttcagaagcttgtatggtaaaagacatgccaatatcagaaactatgcaagtaactggagggacaagaccagatgttgcagagtcatttagtctagc |
4558382 |
T |
|
| Q |
210 |
aagaagtt |
217 |
Q |
| |
|
|||||||| |
|
|
| T |
4558383 |
aagaagtt |
4558390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 97 - 167
Target Start/End: Complemental strand, 4513965 - 4513895
Alignment:
| Q |
97 |
attgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaac |
167 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| | ||||||| ||| | | |||||||||||||||||||||| |
|
|
| T |
4513965 |
attgggagtgcaagttcttcagcaacttgtgtagtaaatggcataatacaatcagaaactaagcaagtaac |
4513895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 177
Target Start/End: Original strand, 4594135 - 4594244
Alignment:
| Q |
68 |
aacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaac |
167 |
Q |
| |
|
|||||||||| ||||| ||| || |||| |||||| ||| |||| ||||||| ||||| ||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
4594135 |
aacatgcactggctggaaaaaggataacatttgggattgcgaattctacagcagcctgtatagtaaagctcataaaataatcagaaactaagcaagtaac |
4594234 |
T |
|
| Q |
168 |
tggtggaaca |
177 |
Q |
| |
|
|||||||||| |
|
|
| T |
4594235 |
tggtggaaca |
4594244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 81 - 217
Target Start/End: Original strand, 4572095 - 4572231
Alignment:
| Q |
81 |
tggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaaga |
180 |
Q |
| |
|
||||| ||||| |||| | |||| || | ||||||||||||||||||| ||||| ||||| || ||||||||||| |||| ||||||| | |||||| |
|
|
| T |
4572095 |
tggactaaagacaacattagggattgaaagttcttcagcagcttgtatagtaaaggacatgctaatatcagaaactatgcaactaactggacggacaaga |
4572194 |
T |
|
| Q |
181 |
ccggcagtggccgagtcatgaagtttagcaagaagtt |
217 |
Q |
| |
|
|| | || || ||||||| |||| |||||||||||| |
|
|
| T |
4572195 |
ccagatgttgcagagtcattaagtctagcaagaagtt |
4572231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 167
Target Start/End: Original strand, 4517495 - 4517555
Alignment:
| Q |
107 |
catgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaac |
167 |
Q |
| |
|
|||||||||||||||||||||| ||||| | || | || |||||||||||||||| |||| |
|
|
| T |
4517495 |
catgttcttcagcagcttgtatagtaaaagtcaatccaatatcagaaactaagcaactaac |
4517555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 217
Target Start/End: Complemental strand, 3516 - 3385
Alignment:
| Q |
86 |
aaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| |||| |||||||||| ||||||||||||| || |
|
|
| T |
3516 |
aaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatggcatgtaacaatcagcgactatgcaagtaacttgtggaacaagaccagc |
3417 |
T |
|
| Q |
186 |
agtggccgagtcatgaagtttagcaagaagtt |
217 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| |
|
|
| T |
3416 |
agtggcagagtcatgaagtttaacaagaagtt |
3385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 69 - 239
Target Start/End: Original strand, 3087862 - 3088032
Alignment:
| Q |
69 |
acatgcactaactggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaact |
168 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||| ||| ||||||||| ||||||||||||||| |
|
|
| T |
3087862 |
acatgcactggctggtgaaaagagaaggattgggagtgcattctcttcagcaacttgtatggtaaatggcatgtaaaaatcagctactaagcaagtaact |
3087961 |
T |
|
| Q |
169 |
ggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagttgaccaaagggctgaaggaagtt |
239 |
Q |
| |
|
||||||| |||||| ||| ||| |||||||||| | | |||||||| ||||||||| |||| |||||| |
|
|
| T |
3087962 |
ggtggaataagaccagcatcggcagagtcatgaattcgacgaagaagttcaccaaagggttgaatgaagtt |
3088032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 217
Target Start/End: Complemental strand, 20862794 - 20862667
Alignment:
| Q |
90 |
gagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggcagtg |
189 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||| |||||| ||| ||||||||||||||||||||| || || | |||||| | || |
|
|
| T |
20862794 |
gagaacaattgggagtgcaagttcttcagcaacttgtatggtaactgacatgaaactatcagaaactaagcaagtaacaggaggtataagaccagatttg |
20862695 |
T |
|
| Q |
190 |
gccgagtcatgaagtttagcaagaagtt |
217 |
Q |
| |
|
| |||||||||||||| |||||||||| |
|
|
| T |
20862694 |
gaagagtcatgaagtttggcaagaagtt |
20862667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 87 - 182
Target Start/End: Complemental strand, 16685287 - 16685192
Alignment:
| Q |
87 |
aaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagacc |
182 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||||||||||| ||||| ||||| || ||||||||||| |||||||||||| || |||||||| |
|
|
| T |
16685287 |
aaagagaacaacagggagtgaaagttcttcagcagcttgtatagtaaaagacatgctaatatcagaaactatgcaagtaactggagggacaagacc |
16685192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 1675670 - 1675758
Alignment:
| Q |
89 |
agagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaaca |
177 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||||| || ||||| ||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
1675670 |
agagaagaattgggagtgaaaattcttcagcagcttgcatagtaaagctcatacaacaatcagaaattaagcaagtaactggtggaaca |
1675758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 2515 - 2317
Alignment:
| Q |
19 |
attagacctttctcaatcagcgtacggaagtacaaagctaccaagaaggaacatgcactaactggacaaaagagaacaattgggagtgcatgttcttcag |
118 |
Q |
| |
|
||||||||||| |||||||| || || |||| | || | ||||||||| ||||||||| |||| || | |||| ||||||||||||| |||||||| |
|
|
| T |
2515 |
attagacctttgtcaatcagtgtgcgaaagtgcgaaacagacaagaaggagcatgcactacctggcgaataaagaaggattgggagtgcatattcttcag |
2416 |
T |
|
| Q |
119 |
cagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaacaagaccggcagtggccgagtcatgaagtttagcaagaagtt |
217 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||| ||| ||||| || | |||||| | | |||| || || | |||| |||||||||||| |
|
|
| T |
2415 |
cagcttgtatggtaaatgacatgtaacaatcagaaactaagctagttactggagggataagaccagaattggcagactcgtcaagtctagcaagaagtt |
2317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 1282571 - 1282667
Alignment:
| Q |
81 |
tggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaaca |
177 |
Q |
| |
|
|||| ||||||||||| | ||||||||| |||||||||||||||||| ||||| ||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
1282571 |
tggaaaaaagagaacattagggagtgcaaattcttcagcagcttgtatagtaaagctcatcaagcaatcagaaactaagcaagtaactggtggaaca |
1282667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 24104220 - 24104382
Alignment:
| Q |
81 |
tggacaaaagagaacaattgggagtgcatgttcttcagcagcttgtatg----gtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaac |
176 |
Q |
| |
|
|||| |||||| || |||||||||||||||||||||| |||| | || ||||||| ||| || |||| |||||||||||||||| |||||||| |
|
|
| T |
24104220 |
tggagaaaagaaaagaattgggagtgcatgttcttcaacagcatcgatcaactgtaaatggcatgtaacaatccgaaactaagcaagtaattggtggaat |
24104319 |
T |
|
| Q |
177 |
aagaccggcagtggccgagtcatgaagtttagcaagaagttgaccaaagggctgaaggaagtt |
239 |
Q |
| |
|
|| ||| || |||| || | ||||||| ||| |||||||| | ||||||||||||||||||| |
|
|
| T |
24104320 |
aacaccatcattggcagattgatgaagtctagtaagaagttcatcaaagggctgaaggaagtt |
24104382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 177
Target Start/End: Original strand, 907 - 995
Alignment:
| Q |
89 |
agagaacaattgggagtgcatgttcttcagcagcttgtatggtaaatgacattaaaaaatcagaaactaagcaagtaactggtggaaca |
177 |
Q |
| |
|
|||||| ||||||||||| | ||||||||||||||| || ||||| ||| || ||||||||| |||||||||||||||||||||| |
|
|
| T |
907 |
agagaagaattgggagtgaaaattcttcagcagcttgcatagtaaagctcatacaacaatcagaaattaagcaagtaactggtggaaca |
995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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