View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_53 (Length: 215)
Name: NF18963_low_53
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_53 |
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| [»] chr2 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 215
Target Start/End: Complemental strand, 4243444 - 4243241
Alignment:
| Q |
12 |
acagacggttatgtagagggatggagagtatagtagcagcgtcttggggattgaaaatggatgtaactatctgttggttccaagtgaggccttccagatt |
111 |
Q |
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| T |
4243444 |
acagacggttatgtagagggatggagagtatagcagcagcgtcttggggattgaaaatggatgtaactatttgttggttccaagagaggccttccagatt |
4243345 |
T |
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| Q |
112 |
caacaagtaattcactgtaaggtcttcatgatgagccggcataggagttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacattt |
211 |
Q |
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| T |
4243344 |
caacaagtaattcactgtaaggtcttcatgatgagccggcataggagttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatagattt |
4243245 |
T |
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| Q |
212 |
attt |
215 |
Q |
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|||| |
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| T |
4243244 |
attt |
4243241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 12 - 215
Target Start/End: Original strand, 33496103 - 33496305
Alignment:
| Q |
12 |
acagacggttatgtagagggatggagagtatagtagcagcgtcttggggattgaaaatggatgtaactatctgttggttccaagtgaggccttccagatt |
111 |
Q |
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||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||| |
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| T |
33496103 |
acagacggttatggagagggatggagagtatagcagcatcgtcttggggattgaaaatggatgtaactatctattggttccaagagaggccttcc-gatt |
33496201 |
T |
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| Q |
112 |
caacaagtaattcactgtaaggtcttcatgatgagccggcataggagttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacattt |
211 |
Q |
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| T |
33496202 |
cagcaagtaattcactgtaagatcttcatgaagagacggcataggagttgaaggtttgtgagaagaaagattacgtattcatggcatggtacatagattt |
33496301 |
T |
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| Q |
212 |
attt |
215 |
Q |
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|||| |
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| T |
33496302 |
attt |
33496305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 213
Target Start/End: Original strand, 42577922 - 42577980
Alignment:
| Q |
155 |
ggagttgagggtttgtgagaaggaagattacgtatccaaggcatggtccatacatttat |
213 |
Q |
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| T |
42577922 |
ggagttgaaggtttgtgtgaaggaatgctacgtatccaaggcatagaccatacatttat |
42577980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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