View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_54 (Length: 213)
Name: NF18963_low_54
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_54 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 9e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 27983790 - 27983655
Alignment:
| Q |
60 |
atgaagtgtggaacattgtgtagagttaaggtaaagagataacaca--gtggagaaagggaccctccaaaaataattagaaactcaacagaagaataagc |
157 |
Q |
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| T |
27983790 |
atgaagggtggaacattgtgtagagttaaggtaaagagataatacatagtggagaaagggaccctccaaaaataattagaaactcaacagaagaataagc |
27983691 |
T |
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| Q |
158 |
acatcacatatagaatctttatgctcttttttatca |
193 |
Q |
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| T |
27983690 |
acatcacatatagaatctttatgctcttttttatca |
27983655 |
T |
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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 60 - 139
Target Start/End: Original strand, 27890973 - 27891054
Alignment:
| Q |
60 |
atgaagtgtggaacattgtgtagagttaaggtaaagagataacaca--gtggagaaagggaccctccaaaaataattagaaa |
139 |
Q |
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||||||||||||| || |||| |||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27890973 |
atgaagtgtggaattttttgtatagttaaggaaaagaggtaacacatagtggagaaagggaccctccaaaaataattagaaa |
27891054 |
T |
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