View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18963_low_7 (Length: 567)
Name: NF18963_low_7
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 259 - 551
Target Start/End: Complemental strand, 45362752 - 45362460
Alignment:
| Q |
259 |
gcaaacaactattagtaaaaaataattaaaagaaacctttttctggagagacattcaatttaacatcagaaacaagggaatcacttgaactccnnnnnnn |
358 |
Q |
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| T |
45362752 |
gcaaacaactattagtaaaaaataattaaaagaaacctttttctggagagacattcaatttaacatcagaaacaagggaatcacttgaactccaaaaaaa |
45362653 |
T |
|
| Q |
359 |
catatcaagatccttcgttttcttagcagcagcaacgttttttggagagaacatttcggggtttggcgcagggtaattcccctttgtcgtagacactgaa |
458 |
Q |
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||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45362652 |
catatgaagatcctccgttttcttagcagcaacaacgttttttggagagaacatttcggggtttggcgcagggtaattcccctttgtcgtagacattgaa |
45362553 |
T |
|
| Q |
459 |
ttatcataattacaagtcctcggtggtgttcctttcaaatcagaagcaccaaagttagaattacgactaccacccatcatggaatgtaaatct |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362552 |
ttatcataattacaagtcctcggtggtgttcctttcaaatcaaaagcaccaaagttagaattacgactaccacccatcatggaatgtaaatct |
45362460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 45363007 - 45362797
Alignment:
| Q |
1 |
agacttttctatgataacaggcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgata |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45363007 |
agactttgctatgataacaggcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgata |
45362908 |
T |
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| Q |
101 |
agttttctccaaaccattatcaatatcagcctcgtcattatacttgctggtggcatcgtttttgctccaccttcctcccctctcttgtgctcatcctcac |
200 |
Q |
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| T |
45362907 |
agttttctccaaaccattatcaatatcagcctcgtcattatacttgctggtggcatcgtttttgccccaccttcctcccctctcttgtgctcatcctcac |
45362808 |
T |
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| Q |
201 |
cctccactgac |
211 |
Q |
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||||||||||| |
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| T |
45362807 |
cctccactgac |
45362797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 36 - 156
Target Start/End: Complemental strand, 25040338 - 25040218
Alignment:
| Q |
36 |
acctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattatcaatatcagcctcgt |
135 |
Q |
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|||||||||||| | |||||||| || || || | ||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| || |
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| T |
25040338 |
acctgaatgaaaccaaagaccaagtgagaccaattaagctagaataagtgtttggatttctgataagttttctccaaaccataatcaatataagccttgt |
25040239 |
T |
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| Q |
136 |
cattatacttgctggtggcat |
156 |
Q |
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||| | ||| ||||||||||| |
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| T |
25040238 |
catcacactagctggtggcat |
25040218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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