View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18963_low_8 (Length: 555)
Name: NF18963_low_8
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18963_low_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 11 - 539
Target Start/End: Complemental strand, 51209890 - 51209362
Alignment:
| Q |
11 |
cataggctgtggtgcaagcaaggaagattgattcccttgtgatgttaaattaacatcttttccatcaacactacccattggcgaaccatcatttctaaat |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
51209890 |
cataggctgtggtgcaagcaaggaagattgattcccttgtgatgttaaattaacatcttttccatcaacactacccattggtgaaccatcatttctaaat |
51209791 |
T |
|
| Q |
111 |
ccaacaacagtttcaatttgtttactcttttctgaatatgtaacttgatctaataaagaggcttgaggactaattgctatattttgtagtggattagtag |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
51209790 |
ccaacaacagtttcaatttgtttactcttttctgaatttgtaacttgatctaatgaagaggcttgaggactaattgctatattttgtaatggattagtag |
51209691 |
T |
|
| Q |
211 |
agtttgaatttgaagcatttagtttcacattattatcaccaattgtagaattaaccaaaggtgtatccaatgtaaaacttttgattctggcagtaagaga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51209690 |
agtttgaatttgaagcatttagtttcacattattatcaccaattgtagaattaaccaaaggtgtatccaatgtaaaacttttgattctggcagtaagaga |
51209591 |
T |
|
| Q |
311 |
agnnnnnnncttagtatttggaagttcagaaaactgaagaactaaaattagagctactattattcccaacaatgaaactaatcttcttgtttctgctaga |
410 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51209590 |
agaaaaaaacttagtatttggaagttcagaaaactgaagaactaaaattagagctactattattcccaacaatgaaactaatcttcttgtttctgctaga |
51209491 |
T |
|
| Q |
411 |
catagaaatctaaaatatcccagatccatgttacaattgcagaatgtactaacatacaatacacgtaccacaagaaaatggaaacttcatggatcacaca |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
51209490 |
catagaaatctaaaatatcccagatccatgttacaattgcagaatgtactaacatacaatacacgtaccacaagaaaatggaaacttcatggatcaccca |
51209391 |
T |
|
| Q |
511 |
tcatgaaatggtttatatttggaattttc |
539 |
Q |
| |
|
||||||||||||| ||||||||||||||| |
|
|
| T |
51209390 |
tcatgaaatggttcatatttggaattttc |
51209362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University