View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18963_low_9 (Length: 530)

Name: NF18963_low_9
Description: NF18963
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18963_low_9
NF18963_low_9
[»] chr8 (7 HSPs)
chr8 (12-154)||(3599321-3599463)
chr8 (307-450)||(3599460-3599603)
chr8 (10-119)||(14339115-14339228)
chr8 (450-530)||(14340191-14340271)
chr8 (450-530)||(3601321-3601401)
chr8 (450-528)||(3576890-3576968)
chr8 (470-528)||(3568346-3568404)
[»] chr4 (5 HSPs)
chr4 (12-154)||(25020450-25020592)
chr4 (183-345)||(25020275-25020437)
chr4 (350-421)||(25020156-25020222)
chr4 (57-133)||(25043107-25043181)
chr4 (263-345)||(25042010-25042092)
[»] chr6 (1 HSPs)
chr6 (453-517)||(1408594-1408655)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 2e-72; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 3599321 - 3599463
Alignment:
Q  12 tatacttactctttttaaaacataacatgctttgttcagaaaaataaaacataacatgttccaaaggagtggacactaacatactccaattttcaacttt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3599321 tatacttactctttttaaaacataacatgctttgttcagaaaaataaaacataacatgttccaaaggagtggacactaacattctccaattttcaacttt 3599420  T
Q  112 ctctcatgtcttgtctcttctcatttacgagccctagttttcc 154  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3599421 ctctcatgtcttgtctcttctcatttacgagccctagttttcc 3599463  T

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Target: chr8; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 307 - 450
Target Start/End: Original strand, 3599460 - 3599603
Alignment:
Q  307 ttccaataatggcagcagttgctactcctacaacacttggtaatactggctcgacctcctacaaggtgtgttttgtaacattttgtatatgttatataaa 406  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3599460 ttccaataatggcagcagttgttacttctacaacacttggtaatactggctcggcctcctacaaggtgtgttttgtaacattttgtatatgttatataaa 3599559  T
Q  407 acttttcatagcttaaaacaaaataaatttagagatagatataa 450  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  3599560 acttttcatagcttaaaacaaaataaatttagagatagatataa 3599603  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 10 - 119
Target Start/End: Original strand, 14339115 - 14339228
Alignment:
Q  10 attatacttactctttttaaaacataacatgctttgttcagaaaaataaaacataacatgttccaaaggagtggacac----taacatactccaattttc 105  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    ||||||||||||||||||    
T  14339115 attatacttactctttttaaaacataatatgctttgttcagaaaaataaaacataaaatgttccaaaggagtggacactaattaacatactccaattttc 14339214  T
Q  106 aactttctctcatg 119  Q
    || |||||||||||    
T  14339215 aattttctctcatg 14339228  T

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Target: chr8; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 450 - 530
Target Start/End: Original strand, 14340191 - 14340271
Alignment:
Q  450 aaatttctcataaaatttgcattctcattttggtttattatttgcaatttttgtgacatgaaaaagaagtgaatggtgaaa 530  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14340191 aaatttctcataaaatttgcattctcattttggtttattatttgcaatttttgtgacatgaaaaagaagtgaatggtgaaa 14340271  T

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Target: chr8; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 450 - 530
Target Start/End: Original strand, 3601321 - 3601401
Alignment:
Q  450 aaatttctcataaaatttgcattctcattttggtttattatttgcaatttttgtgacatgaaaaagaagtgaatggtgaaa 530  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3601321 aaatttctcatcaaatttgcattctcatttttgtttattatttgcaatttttgtgacatgaaaaagaagtgaatggtgaaa 3601401  T

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Target: chr8; HSP #6
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 450 - 528
Target Start/End: Original strand, 3576890 - 3576968
Alignment:
Q  450 aaatttctcataaaatttgcattctcattttggtttattatttgcaatttttgtgacatgaaaaagaagtgaatggtga 528  Q
    ||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||| |||||||||||||||||||    
T  3576890 aaatttctcatcaaatttgcattctcctttttgtttattatttgcaatatttgtgacattaaaaagaagtgaatggtga 3576968  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 470 - 528
Target Start/End: Original strand, 3568346 - 3568404
Alignment:
Q  470 attctcattttggtttattatttgcaatttttgtgacatgaaaaagaagtgaatggtga 528  Q
    ||||||||||| |||||||||||||||| ||| ||||||| |||||| |||||||||||    
T  3568346 attctcatttttgtttattatttgcaatctttttgacatgcaaaagacgtgaatggtga 3568404  T

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Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 12 - 154
Target Start/End: Complemental strand, 25020592 - 25020450
Alignment:
Q  12 tatacttactctttttaaaacataacatgctttgttcagaaaaataaaacataacatgttccaaaggagtggacactaacatactccaattttcaacttt 111  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25020592 tatacttactccttttaaaacataacatgctttgttcagaaaaataaaacataacatgttccaaaggagtggacactagcatactccaattttcaacttt 25020493  T
Q  112 ctctcatgtcttgtctcttctcatttacgagccctagttttcc 154  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  25020492 ctctcatgtcttgtctcttctcatttacaagtcctagttttcc 25020450  T

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Target: chr4; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 183 - 345
Target Start/End: Complemental strand, 25020437 - 25020275
Alignment:
Q  183 tcttttatcttgtctcttctcaccaacaactgcaattctatttctcttaaaggaatcaaggcaatctatggcaacctatgtctcctctaccttggtgtct 282  Q
    |||||||| ||||||||||| ||||||||||| ||||||||||||||||| || |||| |||||||||||||   |||||||||||||||||||||||||    
T  25020437 tcttttattttgtctcttcttaccaacaactgtaattctatttctcttaagggcatcatggcaatctatggccttctatgtctcctctaccttggtgtct 25020338  T
Q  283 tgactcttactattagcacctgtgttccaataatggcagcagttgctactcctacaacacttg 345  Q
    ||||| |||||||||||||||||||||||| ||||||||||| |  |||||||||||||||||    
T  25020337 tgactgttactattagcacctgtgttccaacaatggcagcagctcttactcctacaacacttg 25020275  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 350 - 421
Target Start/End: Complemental strand, 25020222 - 25020156
Alignment:
Q  350 tactggctcgacctcctacaaggtgtgttttgtaacattttgtatatgttatataaaacttttcatagctta 421  Q
    |||||||||| |||||||||||||||||||||||||||||  ||||||||||   |||||||||||||||||    
T  25020222 tactggctcggcctcctacaaggtgtgttttgtaacattt--tatatgttat---aaacttttcatagctta 25020156  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Complemental strand, 25043181 - 25043107
Alignment:
Q  57 aaaacataacatgttccaaaggagtggacactaacatactccaattttcaactttctctcatgtcttgtctcttctc 133  Q
    ||||||||||||| ||||||||||||||||| | |||| |||| ||||||   ||||||||||| ||||||||||||    
T  25043181 aaaacataacatgctccaaaggagtggacacaagcatagtccagttttca--cttctctcatgttttgtctcttctc 25043107  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 263 - 345
Target Start/End: Complemental strand, 25042092 - 25042010
Alignment:
Q  263 tctcctctaccttggtgtcttgactcttactattagcacctgtgttccaataatggcagcagttgctactcctacaacacttg 345  Q
    |||||||||| |  ||||||||| | |||  |||||| ||| |||||||||||||||||||  || |||||||||| ||||||    
T  25042092 tctcctctacttcagtgtcttgaattttatcattagctcctttgttccaataatggcagcatctgttactcctacaccacttg 25042010  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 517
Target Start/End: Original strand, 1408594 - 1408655
Alignment:
Q  453 tttctcataaaatttgcattctcattttggtttattatttgcaatttttgtgacatgaaaaagaa 517  Q
    |||||||| | |||||||||||| ||   |||||||||||||||| |||||||||||||||||||    
T  1408594 tttctcatcatatttgcattctcttt---gtttattatttgcaatctttgtgacatgaaaaagaa 1408655  T

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