View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18964_high_5 (Length: 332)
Name: NF18964_high_5
Description: NF18964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18964_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 8797068 - 8796763
Alignment:
| Q |
14 |
aagatgttcttaacaaatatcaaataacaactttaaagatcaatcgtttctttatcaacttccacgtaagcttcttaacacagtagtttggcctcctgtg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8797068 |
aagatgttcttaacaaatatcaaataacaactttaaagatcaatcgtttctttatcaacttccacgtaagcttcttaacacagtagtttggcctcctgtg |
8796969 |
T |
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| Q |
114 |
tcatggaagnnnnnnntatcacatactgctcatactcacnnnnnnnaattataaaatcgattcaataaaaccagacacatttaatcttgaaatcataatc |
213 |
Q |
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| T |
8796968 |
tcatggaagaaaaaaatatcacatactgctcatactcactttttttaattataaaatcaattcaataaaaccagacacatttaatcttgaaatcataatc |
8796869 |
T |
|
| Q |
214 |
acaatacgcaaatgtgtaatgcttgaagtatgattcacttttacttataagcacaatatcaagcatatatgtatataactagttcaaattaagaacataa |
313 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8796868 |
acaatacacaaatgtgtaatgcttgaagtatgattcacttttacttataagcacaatatcaagcatacatgtatataactagttcaaattaagaacataa |
8796769 |
T |
|
| Q |
314 |
gcacat |
319 |
Q |
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|||||| |
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| T |
8796768 |
gcacat |
8796763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 25760850 - 25760907
Alignment:
| Q |
18 |
tgttcttaacaaatatcaaataacaactttaaagatcaatcgtttctttatcaacttc |
75 |
Q |
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| T |
25760850 |
tgttcttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttc |
25760907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 16706532 - 16706589
Alignment:
| Q |
18 |
tgttcttaacaaatatcaaataacaactttaaagatcaatcgtttctttatcaacttc |
75 |
Q |
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| T |
16706532 |
tgttcttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttc |
16706589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 16706744 - 16706804
Alignment:
| Q |
228 |
tgtaatgcttgaagtatgattcacttttacttataagcacaatatcaagcatatatgtata |
288 |
Q |
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|||| ||| |||||||| ||||||||||| ||||||| |||| |||||| ||||| ||||| |
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| T |
16706744 |
tgtactgcatgaagtatcattcacttttaattataagaacaacatcaagaatataagtata |
16706804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 21601419 - 21601362
Alignment:
| Q |
18 |
tgttcttaacaaatatcaaataacaactttaaagatcaatcgtttctttatcaacttc |
75 |
Q |
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||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| |
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| T |
21601419 |
tgttcttaacaaatatcaaatgacacctttaaagatcaataatttctttatcaacttc |
21601362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 228 - 288
Target Start/End: Complemental strand, 21601207 - 21601147
Alignment:
| Q |
228 |
tgtaatgcttgaagtatgattcacttttacttataagcacaatatcaagcatatatgtata |
288 |
Q |
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|||| ||| |||||||| ||||||||||| ||||||| |||| |||||| ||||| ||||| |
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| T |
21601207 |
tgtactgcatgaagtatcattcacttttaattataagaacaacatcaagaatataagtata |
21601147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 237
Target Start/End: Complemental strand, 21757128 - 21757086
Alignment:
| Q |
195 |
taatcttgaaatcataatcacaatacgcaaatgtgtaatgctt |
237 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||| |
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| T |
21757128 |
taatcttgaaattgtaatcacaatacacaaatgtgtaatgctt |
21757086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 313
Target Start/End: Original strand, 11041636 - 11041733
Alignment:
| Q |
222 |
caaatgtgtaatgcttgaagtatgattcacttttacttataagcacaatatcaagcatata------tgtatataactagttcaaattaagaacataa |
313 |
Q |
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|||| |||| |||||||||||| ||| ||||||||| |||||||||| ||||||||| || | |||||||| |||||||||| ||||||||| |
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| T |
11041636 |
caaacgtgtgatgcttgaagtaccatttacttttactcataagcacaaaatcaagcatctagctgagtatatataacaagttcaaattgagaacataa |
11041733 |
T |
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