View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18964_low_1 (Length: 677)
Name: NF18964_low_1
Description: NF18964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18964_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 640; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 1 - 660
Target Start/End: Complemental strand, 12508538 - 12507879
Alignment:
| Q |
1 |
atgcagtgatgatcaaggattagtatcatcaccacaaacaaatgaagcaaaaaacagtttaacttttgcttcattgaaagcaaaattgagcaagaatctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508538 |
atgcagtgatgatcaaggattagtatcatcaccacaaacaaatgaagcaaaaaacagtttaacttttgcttcattgaaagcaaaattgagcaagaatctt |
12508439 |
T |
|
| Q |
101 |
caaagtattatggcaagaacaagtgatcatcataacaacaagttttcaaagagtagagtgagtgatcattttacttttgctagcatattcaatcgtagga |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
12508438 |
caaagtattatggcaagaacaagtgatcataataacaacaagttttcaaagagtagagtgagtgatcattttacttttgctagcatattcaaccgtagga |
12508339 |
T |
|
| Q |
201 |
atcataattacaatcaaatatctgctttggatatgaagaacattgagaaagttgtgcagcctagtatcattgttccctctaatgatggtgacccttctag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508338 |
atcataattacaatcaaatatctgctttggatatgaagaacatagagaaagttgtgcagcctagtatcattgttccctctaatgatggtgacccttctag |
12508239 |
T |
|
| Q |
301 |
ggtttctgattgtagctctgaatggtttggatttcagaatctagggttagattctgatggatctgatataggagagattaataataatgctaatattaat |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
12508238 |
ggtttctgattgtagctctgaatggtttggatttcagaatctagggttagattctgatggatctgatataggagagattaacaataatgctaatattaat |
12508139 |
T |
|
| Q |
401 |
gttggtgatcaaggttttttggaacaactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaaggtatctt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508138 |
gttggtgatcaaggttttttggaacaactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaaggtatctt |
12508039 |
T |
|
| Q |
501 |
cttctgttcttgtgcctccaactttctctagttctccttatgattgtggttcaccttatagtggttatgcttctccatataatagttgtggatccccttg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12508038 |
cttctgttcttgtgcctccaactttctctagttctccttatgattgtggttcaccttatagtggttatgcttctccatataatagttgtggatccccttg |
12507939 |
T |
|
| Q |
601 |
taatggttatgcctctccttattatggtagcaagaagtaaaattgaaagaacatgaaatt |
660 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
12507938 |
taatggttatgcctctccttattatggtagcaagaagtaaaattggaagaacatgaaatt |
12507879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 3e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 294 - 542
Target Start/End: Complemental strand, 21279607 - 21279361
Alignment:
| Q |
294 |
cttctagggtttctgattgtagctctgaatggtttggatttcagaatctagggttagattctgatggatctgatataggagagattaataataatgctaa |
393 |
Q |
| |
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||||||| |||||||||||||| |||||||||||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
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| T |
21279607 |
cttctagtgtttctgattgtagttctgaatggtttggatatcataataaagggttagattatgatggatgtgatataggagagattaatattaatgctaa |
21279508 |
T |
|
| Q |
394 |
tattaatgttggtgatcaaggtttttt-ggaacaactcatggggtggattgatgatgatagttctgatatttgtgaaggttcaagtagtaagaggtttaa |
492 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
21279507 |
tattaatgttggtgatcaaggtttttttggaacaactcatgggatggattgatgat---agttctgatatttgtgaaggttcaagtagtaaaaggtttaa |
21279411 |
T |
|
| Q |
493 |
ggtatcttcttctgttcttgtgcctccaactttctctagttctccttatg |
542 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21279410 |
ggtatcttcttctgttcttgtgcctccaactttctctagttctccttatg |
21279361 |
T |
|
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