View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18964_low_11 (Length: 253)
Name: NF18964_low_11
Description: NF18964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18964_low_11 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 37248529 - 37248287
Alignment:
| Q |
20 |
gctgtccctaaagattcatcaatattgttatggtaaagacgagtagggaaaattggaatctcttgtataggcctcatgtatggatgaaaacgacggttat |
119 |
Q |
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| T |
37248529 |
gctgtccctaaagattcatcaatattgttatggtaaagacgagtagggaaaattggaatctcttgtataggcctcatgtatggatgaaaacgacggttat |
37248430 |
T |
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| Q |
120 |
aattaccacgtccatgcatgggaaacatagtgtgagatgaaggtgg---------tggtccattgccgcgtgaaaaaactctgtgtgaaaattgtggtgt |
210 |
Q |
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| T |
37248429 |
aattaccacgtccatgcatgggaaacatagtgtgagatgaaggtggtggtagtggtggtccattgcggcgtgaaaaaactcttcgtgaaaattgtggtgt |
37248330 |
T |
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| Q |
211 |
tgctggtggtatgaatgttatcaatggtgtgttgttttcattt |
253 |
Q |
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| T |
37248329 |
tgctggtggtatgaatgttgtcaatggtgtgttgttttcattt |
37248287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 20 - 253
Target Start/End: Complemental strand, 37238841 - 37238595
Alignment:
| Q |
20 |
gctgtccctaaagattcatcaatattgttatggtaaagacgagtagggaaaattggaatctcttgtataggcctcatgtatggatgaaaacgacggttat |
119 |
Q |
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| T |
37238841 |
gctgtccctaaagattcatcaatattgttatggtaaagacgagtagggaaaattggaatctcttgtataggcctcatgtatggatgaaaacgacggttat |
37238742 |
T |
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| Q |
120 |
aattaccacgtccatgcatgggaaacatagtgtgagatgaaggt-------------ggtggtccattgccgcgtgaaaaaactctgtgtgaaaattgtg |
206 |
Q |
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| T |
37238741 |
aattaccacgtccatgcatgggaaacatagtgtgagatgaaggtcgtgcgtggtaggggtggtccattgcgacgcaaaaaagctcttcgtgaaaatcgtg |
37238642 |
T |
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| Q |
207 |
gtgttgctggtggtatgaatgttatcaatggtgtgttgttttcattt |
253 |
Q |
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| T |
37238641 |
gtgttgctggtggtatgaatgatgtcaatggtgtgttgttttcattt |
37238595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 70 - 168
Target Start/End: Complemental strand, 37252706 - 37252605
Alignment:
| Q |
70 |
aattggaatctcttgtataggcctcatgtatggatgaaaacgacggttataattaccacgtccatgcatggga---aacatagtgtgagatgaaggtggt |
166 |
Q |
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| T |
37252706 |
aattggaacctctggtataggcctcacgtatggatgaaaacggcggttataattaccgcttccatgcataggaaacaacatagtgtgtgatgaaggtggt |
37252607 |
T |
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| Q |
167 |
gg |
168 |
Q |
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| T |
37252606 |
gg |
37252605 |
T |
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