View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18964_low_2 (Length: 575)
Name: NF18964_low_2
Description: NF18964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18964_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 13)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 24 - 564
Target Start/End: Original strand, 4862221 - 4862761
Alignment:
| Q |
24 |
caacgtcaacaaattataaacgattaaattacacactatagtaatctttataaaacatacatttcaaaattttaagatgagtgacaactatctatcttgc |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
4862221 |
caacgtcaacaaattataaacgattaaattacacactatagtaatctttataaaacatacatttcaaaattttaggatgagtgacaactatctatcttgc |
4862320 |
T |
|
| Q |
124 |
tcttggattcccgatctcagaaaacaccgtagcattaagtagatgctggtcttctgtactagctgaaatggtgcttaccttgcttgtttgagacccgtaa |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4862321 |
tcttggattcccgatctcagaaaacaccgtagcataaagtagatgctgatcttctgtactagctgaaatggtgcttaccttgcttgtttgagacccgtaa |
4862420 |
T |
|
| Q |
224 |
tcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttccttttcatgagtccaac |
323 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4862421 |
tcatcactgctactcgtgaaacaaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttccttttcatgagtccaac |
4862520 |
T |
|
| Q |
324 |
cagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaa |
423 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4862521 |
cagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaa |
4862620 |
T |
|
| Q |
424 |
acaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacggttctaccatctcttcaattatgacaccttcattg |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4862621 |
acaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacggatctaccatctcttcaattatgacaccttcattg |
4862720 |
T |
|
| Q |
524 |
taacatttttgaaaccaaacgactaaactcgcttttttctt |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4862721 |
taacatttttgaaaccaaacgactaaactcgcttttttctt |
4862761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 73 - 564
Target Start/End: Complemental strand, 4698925 - 4698434
Alignment:
| Q |
73 |
ataaaacatacatttcaaaattttaagatgagtgacaactatctatcttgctcttggattcccgatctcagaaaacaccgtagcattaagtagatgctgg |
172 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||| || |||||||| ||||||||||||||| ||||||||||||||||| ||| || | | | || |
|
|
| T |
4698925 |
ataaaatatacatttggaaattttagaatgagtgagaattatctatcgtgctcttggattcccaatctcagaaaacaccgttgcagaaaacaaaggttga |
4698826 |
T |
|
| Q |
173 |
tcttctgtactagctgaaatggtgcttaccttgcttgtttgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaa |
272 |
Q |
| |
|
||||| || || |||||| |||||||||| ||||||||||||| | | ||||||||||||||||| |||||||||| ||||||||||||||||||| ||| |
|
|
| T |
4698825 |
tcttcagtgctggctgaattggtgcttactttgcttgtttgagtctcataatcatcactgctactagtgaaacgaatatcacttccatcttcacttataa |
4698726 |
T |
|
| Q |
273 |
actgtgacacttgttgtctttcctcacttttttccttttcatgagtccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaa |
372 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||||| | |||||||| |||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
4698725 |
actgcgacacttgttgtcttttctcacttttttccttttcattattccaaccaaacttagtatcctcctcacttatctccaactgcaatgcaaactctaa |
4698626 |
T |
|
| Q |
373 |
agctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttata |
472 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||| ||||||| ||| | ||| ||| |||||| |
|
|
| T |
4698625 |
agctccaacaacatcactcatcgacatccgttgatttccatcatcatgcaaacaactcaacaccatttggcaataactttttagacattcagccgttata |
4698526 |
T |
|
| Q |
473 |
gaatcttttatgaacggttctaccatctcttcaattatgacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttctt |
564 |
Q |
| |
|
||||| ||||||||||| || ||||||||||| || || |||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
4698525 |
gaatcctttatgaacgggtccaccatctcttcgatgatcacaccttcattgtaacatctttggaaccaaaagactaaactcgcttttttctt |
4698434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 212 - 564
Target Start/End: Complemental strand, 4785428 - 4785079
Alignment:
| Q |
212 |
tgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttcctttt |
311 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||||| | |||||| ||||| ||| ||||| ||||||| || | |||| |||||| |||||||||| |
|
|
| T |
4785428 |
tgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatca---gtaaaatgtgacaattctatcctttgctcactcttttcctttt |
4785332 |
T |
|
| Q |
312 |
catgagt-ccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttc |
410 |
Q |
| |
|
| | || ||||| || |||| |||| |||||||||||||| |||||||||||||||||||| | |||| ||||||||||| |||||||||||||||| |
|
|
| T |
4785331 |
ccttggtaccaacaag-cttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatttc |
4785233 |
T |
|
| Q |
411 |
catcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacggttctaccatctcttcaattat |
510 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||| |
|
|
| T |
4785232 |
catcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatctttaatgaacgggtccaccatatcttcaattac |
4785133 |
T |
|
| Q |
511 |
gacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttctt |
564 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| | ||||| ||||||||||| |
|
|
| T |
4785132 |
cataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttctt |
4785079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 212 - 564
Target Start/End: Complemental strand, 4817857 - 4817508
Alignment:
| Q |
212 |
tgagacccgtaatcatcactgctactcgtgaaacgaacatcacttccatcttcacttgtaaactgtgacacttgttgtctttcctcacttttttcctttt |
311 |
Q |
| |
|
|||||||| || |||||||| ||||| ||||||| | |||||| ||||| ||| ||||| ||||||| || | |||| |||||| |||||||||| |
|
|
| T |
4817857 |
tgagacccatagtcatcactactacttgtgaaacacatatcactcccatcatca---gtaaaatgtgacaattctatcctttgctcactcttttcctttt |
4817761 |
T |
|
| Q |
312 |
catgagt-ccaaccagacttagtatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttc |
410 |
Q |
| |
|
| | || ||||| || |||| |||| |||||||||||||| |||||||||||||||||||| | |||| ||||||||||| |||||||||||||||| |
|
|
| T |
4817760 |
ccttggtaccaacaag-cttactatcctcctcactcatctctaactgcaatgcaaactctaatgtcgcaaccacatcactcatcgacattcgttgatttc |
4817662 |
T |
|
| Q |
411 |
catcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacggttctaccatctcttcaattat |
510 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||||||| |
|
|
| T |
4817661 |
catcatcatgcaaacaatttaacaccatttgacaataacatttcaaacactcacttgttatagaatctttaatgaacgggtccaccatatcttcaattac |
4817562 |
T |
|
| Q |
511 |
gacaccttcattgtaacatttttgaaaccaaacgactaaactcgcttttttctt |
564 |
Q |
| |
|
| |||||||||||||||| ||||||||||||| | ||||| ||||||||||| |
|
|
| T |
4817561 |
cataccttcattgtaacatgtttgaaaccaaacagccaaacttgcttttttctt |
4817508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 362 - 533
Target Start/End: Complemental strand, 4713512 - 4713341
Alignment:
| Q |
362 |
gcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacact |
461 |
Q |
| |
|
|||| |||||||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||| || ||||||| |||||||||||||||||||| |
|
|
| T |
4713512 |
gcaagctctaaagtcccaaccacatcactcatagacattcgttgatttccatcaccatgcaaacaactcaacaccatttcacaataacatttcaaacact |
4713413 |
T |
|
| Q |
462 |
cacttgttatagaatcttttatgaacggttctaccatctcttcaattatgacaccttcattgtaacattttt |
533 |
Q |
| |
|
||||||||||||| || ||||||||||| || ||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
4713412 |
cacttgttatagagtcctttatgaacgggtccaccatctcttcaactatcacaccttcattgtaacattttt |
4713341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 362 - 533
Target Start/End: Complemental strand, 4854882 - 4854711
Alignment:
| Q |
362 |
gcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaaaaccatttgacaataacatttcaaacact |
461 |
Q |
| |
|
|||| |||||||| |||||| ||||||||||| ||||| |||||||||||||| ||||||||||||| || ||||||||||||||| |||||||||||| |
|
|
| T |
4854882 |
gcaagctctaaagttccaaccacatcactcatagacatccgttgatttccatcaccatgcaaacaactcaacaccatttgacaataaaatttcaaacact |
4854783 |
T |
|
| Q |
462 |
cacttgttatagaatcttttatgaacggttctaccatctcttcaattatgacaccttcattgtaacattttt |
533 |
Q |
| |
|
||||||||||||| || |||||||| || || ||||||||||||| ||| || ||||||||||||||||||| |
|
|
| T |
4854782 |
cacttgttatagagtcctttatgaatgggtccaccatctcttcaactatcactccttcattgtaacattttt |
4854711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 334 - 432
Target Start/End: Original strand, 4642346 - 4642444
Alignment:
| Q |
334 |
atcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaa |
432 |
Q |
| |
|
|||||||||||||| | |||| ||||| |||||||||||| | ||||| || | ||||||||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
4642346 |
atcttcctcactcaccaccaattgcaacgcaaactctaaacccccaaccacttgactcattgagggtcgttgaattccatcatcatgcaaacaacttaa |
4642444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 334 - 432
Target Start/End: Original strand, 4635499 - 4635597
Alignment:
| Q |
334 |
atcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaa |
432 |
Q |
| |
|
|||||||||||||| | | || ||||| |||||||||||| | ||||| || | ||||||||| ||||||| ||||||| ||||||||||||||||| |
|
|
| T |
4635499 |
atcttcctcactcaccactaattgcaacgcaaactctaaacccccaaccacttgactcattgagggtcgttgaattccatcatcatgcaaacaacttaa |
4635597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 333 - 541
Target Start/End: Original strand, 4665576 - 4665784
Alignment:
| Q |
333 |
tatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaa |
432 |
Q |
| |
|
||||||| ||||||| |||| |||||||||||||||||| | ||||| || | ||||||||| ||||||| | ||||| |||||||| |||||||| |
|
|
| T |
4665576 |
tatcttcttcactcactaccaattgcaatgcaaactctaaacccccaaccacttgactcattgagggtcgttgagtcccatcatcatgcaagcaacttaa |
4665675 |
T |
|
| Q |
433 |
aaccatttgacaataacatttcaaacactcacttgttatagaatcttttatgaacggttctaccatctcttcaattatgacaccttcattgtaacatttt |
532 |
Q |
| |
|
||| | |||||| ||||||| ||||| ||| |||||||| ||| ||| || || || || | ||||||| |||||||||| |||||||||| |
|
|
| T |
4665676 |
cgccaacttgcaataatatttcaagtactcatctgtgatagaatcccttacgaatggatcaactatttgttcaattgccacaccttcatcgtaacatttt |
4665775 |
T |
|
| Q |
533 |
tgaaaccaa |
541 |
Q |
| |
|
| ||||||| |
|
|
| T |
4665776 |
ttaaaccaa |
4665784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 333 - 482
Target Start/End: Original strand, 4660442 - 4660591
Alignment:
| Q |
333 |
tatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaa |
432 |
Q |
| |
|
||||| ||||||||| | |||| ||||| ||||||||||| | ||||| || | ||||||||| ||||||| | ||||| ||||||||||||||||| |
|
|
| T |
4660442 |
tatctccctcactcaccaccaattgcaacacaaactctaaacccccaaccacttgactcattgaaggtcgttgagtcccatcatcatgcaaacaacttaa |
4660541 |
T |
|
| Q |
433 |
aaccatttgacaataacatttcaaacactcacttgttatagaatctttta |
482 |
Q |
| |
|
||| | |||||| ||| |||||||||| || ||||||||||||| |
|
|
| T |
4660542 |
cgccaacttgcaataatattccaaacactcatccgtgatagaatctttta |
4660591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 4817996 - 4817911
Alignment:
| Q |
73 |
ataaaacatacatttcaaaattttaagatgagtgacaactatctatcttgctcttggattcccgatctcagaaaacaccgtagcat |
158 |
Q |
| |
|
|||||| ||||||| ||||||||| | |||| ||| |||||||| |||| ||||||| || |||||||||||||||||||||| |
|
|
| T |
4817996 |
ataaaatatacattcgaaaattttagaaatagtggcaaatatctatcgtgcttttggatttccaatctcagaaaacaccgtagcat |
4817911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 477
Target Start/End: Original strand, 4629550 - 4629694
Alignment:
| Q |
333 |
tatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaacttaa |
432 |
Q |
| |
|
||||||| ||||||| |||| |||||||||||||||||| | ||||| || | ||||||||| ||||||| | ||||| |||||||| |||||||| |
|
|
| T |
4629550 |
tatcttcttcactcactaccaattgcaatgcaaactctaaacccccaaccacttgactcattgagggtcgttgagtcccatcatcatgcaagcaacttaa |
4629649 |
T |
|
| Q |
433 |
aaccatttgacaataacatttcaaacactcacttgttatagaatc |
477 |
Q |
| |
|
||| | |||||| ||||||| |||||| ||| |||||||| |
|
|
| T |
4629650 |
cgccaacttgcaataatatttcaagcactcaactgtgatagaatc |
4629694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 429
Target Start/End: Original strand, 4671281 - 4671377
Alignment:
| Q |
333 |
tatcttcctcactcatctccaactgcaatgcaaactctaaagctccaacaacatcactcattgacattcgttgatttccatcgtcatgcaaacaact |
429 |
Q |
| |
|
||||||||||||||| | |||| ||||| ||||||||||| | ||||| || | ||||||||| ||||||| ||||||| |||||||| ||||| |
|
|
| T |
4671281 |
tatcttcctcactcaccaccaattgcaacacaaactctaaacccccaaccacttgactcattgagggtcgttgagttccatcatcatgcaagcaact |
4671377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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