View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18964_low_4 (Length: 474)
Name: NF18964_low_4
Description: NF18964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18964_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 3 - 458
Target Start/End: Original strand, 6085018 - 6085473
Alignment:
| Q |
3 |
ctggtgcgaaatgtaagttcgtctgttttattccttagtaggaaaatccatttctgctgcaatattgtgttaaggttgtttgtttacatatcctgcagga |
102 |
Q |
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| T |
6085018 |
ctggtgcgaaatgtaagttcgtctgttttattccttagtaggaaaatccatttctgctgcaatattgtgttaaggttgtttgtttacatatcctgcagga |
6085117 |
T |
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| Q |
103 |
atgggagataacagctgcttcagagaaattggcagagtgtcaagaaaccatccttaaccttgagaagcagttgaaggcaattgctgcaacaacagatgtg |
202 |
Q |
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| T |
6085118 |
atgggagataacagctgcttcagagaaattggcagagtgtcaagaaaccatccttaaccttgagaagcagttgaaggcaattgctgcaacaacagatgtg |
6085217 |
T |
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| Q |
203 |
tcaattttcgacaacattattgccgctcatcgtcgtcctataattacaaacacaactagtgttagtgttcccttaaaagacaaggtgaaaaatcgaccgt |
302 |
Q |
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| T |
6085218 |
tcaattttcaacaacattattgccgctcatcgtcgtcctataattacaaacacaactagtgttagtgttcccttaaaagacaaggtgaaaaatcgaccgt |
6085317 |
T |
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| Q |
303 |
ccctattggatcaaatgcttgctgaagatgaagcaaaagccaagttttgtaaaacaagcgaaagaaattttatacagccacttgaaaagatcgtagtttt |
402 |
Q |
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| T |
6085318 |
ccctattggatcaaatgcttgctgaagatgaagcaaaagccaagttttgtaaaacaagcgaaagaaattttatacagccacttgaaaagatcgtagtttt |
6085417 |
T |
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| Q |
403 |
gaaaggattaaaaggccgtgatgacgatgttaatgtcaattctttggccattttac |
458 |
Q |
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| T |
6085418 |
gaaaggattaaaaggccgtgatgacgatgttaatgtcaattctttggccattttac |
6085473 |
T |
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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 39104810 - 39104730
Alignment:
| Q |
92 |
atcctgcaggaatgggagataacagctgcttcagagaaattggcagagtgtcaagaaaccatccttaaccttgagaagcag |
172 |
Q |
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| T |
39104810 |
atcctacaggacttggagataacggccgcttcagaaaagttggcagagtgtcaagaaaccatccttaatcttgggaagcag |
39104730 |
T |
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