View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18964_low_6 (Length: 406)
Name: NF18964_low_6
Description: NF18964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18964_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 14726631 - 14726241
Alignment:
| Q |
1 |
cttttcttgtagatggtgattgagcgggaagaaatcttataattgcctcttctacgaattgtgttgggatccttgtaagtgcttggagtgatttgggggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14726631 |
cttttcttgtagatggtgattgagcgggaagaaatcttataattgcctcttctacgaattgtgttgggatccttgtaagtgcttggagtgatttgggggt |
14726532 |
T |
|
| Q |
101 |
gggggtgtagaagctgtcagttgttcttgcgttttttggctacggtgttcctgtgtttgtgggtaggtgggagtctttttggtttgcagaggcctagttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14726531 |
gggggtgtagaagctgtcagttgttcttgcgttttttggctacggtgttactgtgtttgtgggtaggtgggagtctttttggtttgcagaggcctagttt |
14726432 |
T |
|
| Q |
201 |
tggttgaatgtgatggttttgtgttggtgtcggatatctgacacgttcagaaatgtcggtactatagagatcagaattgatgcctttctatcatatagtg |
300 |
Q |
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| T |
14726431 |
tggttgaatgtgaaggttttgtgttggtgtcggatatctgacacgttcagaaatgtcggtactatagagatcagaattgatgcctttctatcatatagtg |
14726332 |
T |
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| Q |
301 |
acgctgggcatgtattggttgtcaaataccgactgctgtcgaatatgatataattgatatggtcctgctgtacgttctttagtataaaatg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14726331 |
acgctgggcatgtattggttgtcaaataccgactgctgtcgaatatgatataattgatatggtcctgctgtacgttctttagtataaaatg |
14726241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 391
Target Start/End: Original strand, 17596879 - 17597269
Alignment:
| Q |
1 |
cttttcttgtagatggtgattgagcgggaagaaatcttataattgcctcttctacgaattgtgttgggatccttgtaagtgcttggagtgatttgggggt |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
17596879 |
cttttcttgtagatggcgattgagcgggaagaaatcttataattgcctcctctacggatggtgttgggatccttgtaagtgcttggagtgatttgggggt |
17596978 |
T |
|
| Q |
101 |
gggggtgtagaagctgtcagttgttcttgcgttttttggctacggtgttcctgtgtttgtgggtaggtgggagtctttttggtttgcagaggcctagttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17596979 |
gggggtgtagaagctgtcagttgttcttgcgttttttggctacggtgtttctgtgtttgtgggtaggtgggagtctttttggtttgcagaggcctagttt |
17597078 |
T |
|
| Q |
201 |
tggttgaatgtgatggttttgtgttggtgtcggatatctgacacgttcagaaatgtcggtactatagagatcagaattgatgcctttctatcatatagtg |
300 |
Q |
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| T |
17597079 |
tggttgaatgtgacggttttgtgttggtgtcggatatctgacacgttcagaaatgtcggtactatagagatcataattgacgcctttctatcatatagtg |
17597178 |
T |
|
| Q |
301 |
acgctgggcatgtattggttgtcaaataccgactgctgtcgaatatgatataattgatatggtcctgctgtacgttctttagtataaaatg |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
17597179 |
acgctgggcatgtattggttgtcaaataccgactgctgtcgaatatgatataattgatatggtcctgttgtacgttatttagtataaaatg |
17597269 |
T |
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