View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18964_low_8 (Length: 330)
Name: NF18964_low_8
Description: NF18964
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18964_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 26608462 - 26608769
Alignment:
| Q |
1 |
cttaaagaaaaataaataaatgacaaatctaannnnnnngttgttaagaaaccgtaaaaataattgtctttccataaaacttcttgctgcgataagaatg |
100 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26608462 |
cttaaagaaaaataaataaatgacaaatcttatttttt--ttgttaagaaaccgtaaaaataattgtctttccataaaacttcttactgcgataagaatg |
26608559 |
T |
|
| Q |
101 |
aatttggtaaagatcatgtcaattgaacacaaatccacacttcactttttggttgatcagccatagttgagtaagagtcattattcccttatattgagac |
200 |
Q |
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|||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26608560 |
aatttggtaaagatcatgtcgattggacacaaattcacacttcactttttggttgatcagccatagttgagtaagagtcattattcccttatattgagac |
26608659 |
T |
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| Q |
201 |
aagtcaagttcaaacaagtgcagtgagtgctctttgtcgtgtgctaggtctgatgtaataaagaatctcgaaccatatctagatcaaattcaacctccaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26608660 |
aagtcaagttcaaacaagtgcagtgagtgctctttgtcgtgtgctaggtctgatgtaataaagaatctcgaaccatatctagatcaaattcaacctccaa |
26608759 |
T |
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| Q |
301 |
aaatatctac |
310 |
Q |
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|||||||||| |
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| T |
26608760 |
aaatatctac |
26608769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 26595130 - 26595190
Alignment:
| Q |
219 |
tgcagtgagtgctctttgtcgtgtgctaggtctgatgtaataaagaatctcgaaccatatc |
279 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
26595130 |
tgcagtgagtgctctttgtcgtctgctactcctgatgtaataaagaatctcgaaccatatc |
26595190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 102 - 157
Target Start/End: Original strand, 26595012 - 26595067
Alignment:
| Q |
102 |
atttggtaaagatcatgtcaattgaacacaaatccacacttcactttttggttgat |
157 |
Q |
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||||||||||||||||||| || || ||||||| ||||||| ||||||| |||||| |
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| T |
26595012 |
atttggtaaagatcatgtcgatggagcacaaattcacacttaacttttttgttgat |
26595067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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