View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18965_high_12 (Length: 279)

Name: NF18965_high_12
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18965_high_12
NF18965_high_12
[»] chr8 (13 HSPs)
chr8 (2-258)||(35430976-35431233)
chr8 (105-217)||(39820436-39820547)
chr8 (162-221)||(1676715-1676774)
chr8 (165-230)||(13009493-13009558)
chr8 (167-217)||(13845241-13845291)
chr8 (168-221)||(3658150-3658203)
chr8 (105-171)||(36450694-36450759)
chr8 (107-177)||(44067574-44067644)
chr8 (102-147)||(13436907-13436952)
chr8 (165-230)||(40063945-40064010)
chr8 (165-226)||(44067514-44067575)
chr8 (105-221)||(30067968-30068084)
chr8 (105-177)||(33389295-33389367)
[»] chr7 (12 HSPs)
chr7 (103-221)||(23751903-23752020)
chr7 (165-230)||(29812664-29812729)
chr7 (118-218)||(12278841-12278941)
chr7 (168-226)||(4017797-4017855)
chr7 (168-230)||(22683758-22683820)
chr7 (165-221)||(23930222-23930278)
chr7 (165-219)||(17780084-17780138)
chr7 (103-177)||(21138929-21139002)
chr7 (168-226)||(38804558-38804616)
chr7 (104-216)||(21880160-21880272)
chr7 (165-226)||(43249991-43250052)
chr7 (165-229)||(7133278-7133342)
[»] chr5 (10 HSPs)
chr5 (107-221)||(7997108-7997222)
chr5 (165-230)||(39695999-39696064)
chr5 (165-217)||(43554528-43554580)
chr5 (175-226)||(42469219-42469270)
chr5 (109-206)||(36577616-36577717)
chr5 (178-232)||(2577193-2577247)
chr5 (167-229)||(18607099-18607161)
chr5 (167-217)||(25863211-25863261)
chr5 (100-224)||(19737416-19737541)
chr5 (167-216)||(31264446-31264495)
[»] chr4 (14 HSPs)
chr4 (103-230)||(3144585-3144717)
chr4 (105-219)||(39507059-39507173)
chr4 (165-226)||(20743278-20743339)
chr4 (105-176)||(17876214-17876285)
chr4 (165-226)||(23386143-23386205)
chr4 (165-226)||(24343505-24343566)
chr4 (165-217)||(31243548-31243600)
chr4 (170-226)||(46971904-46971960)
chr4 (175-215)||(49659533-49659573)
chr4 (165-215)||(6273953-6274003)
chr4 (172-221)||(34515881-34515930)
chr4 (173-230)||(47191001-47191058)
chr4 (178-218)||(7424676-7424716)
chr4 (165-217)||(53968553-53968605)
[»] chr6 (14 HSPs)
chr6 (165-226)||(6389741-6389802)
chr6 (108-221)||(12235462-12235575)
chr6 (165-221)||(26247429-26247485)
chr6 (105-221)||(34446568-34446690)
chr6 (165-218)||(17168463-17168516)
chr6 (171-215)||(2153893-2153937)
chr6 (106-216)||(33419181-33419292)
chr6 (164-221)||(12086344-12086401)
chr6 (162-231)||(13689190-13689259)
chr6 (165-218)||(19602181-19602234)
chr6 (169-219)||(6299517-6299567)
chr6 (169-219)||(6306327-6306377)
chr6 (176-221)||(7625125-7625170)
chr6 (194-231)||(14819654-14819691)
[»] chr3 (22 HSPs)
chr3 (162-226)||(15864831-15864895)
chr3 (107-226)||(24204983-24205102)
chr3 (167-226)||(25892458-25892517)
chr3 (106-219)||(25365467-25365580)
chr3 (117-217)||(26665143-26665243)
chr3 (105-221)||(21211291-21211413)
chr3 (170-216)||(1830351-1830397)
chr3 (168-218)||(34189433-34189483)
chr3 (102-217)||(3730105-3730217)
chr3 (165-218)||(14223853-14223906)
chr3 (166-226)||(8903430-8903489)
chr3 (165-221)||(12704657-12704713)
chr3 (96-174)||(7949015-7949092)
chr3 (105-147)||(17005548-17005590)
chr3 (168-218)||(25326432-25326482)
chr3 (167-221)||(25652033-25652087)
chr3 (165-219)||(52369780-52369834)
chr3 (171-224)||(20691319-20691372)
chr3 (165-218)||(25074795-25074848)
chr3 (106-147)||(25211607-25211648)
chr3 (165-218)||(27903638-27903691)
chr3 (162-230)||(12100264-12100331)
[»] scaffold0199 (1 HSPs)
scaffold0199 (162-221)||(1952-2011)
[»] chr2 (14 HSPs)
chr2 (165-218)||(23354652-23354705)
chr2 (165-230)||(25544475-25544540)
chr2 (168-229)||(38919201-38919262)
chr2 (162-219)||(12748689-12748746)
chr2 (165-218)||(23354995-23355048)
chr2 (165-218)||(24011042-24011095)
chr2 (105-171)||(30563474-30563540)
chr2 (168-218)||(37986785-37986835)
chr2 (128-218)||(18570978-18571068)
chr2 (163-217)||(22085011-22085066)
chr2 (168-218)||(10535762-10535812)
chr2 (165-227)||(11308004-11308065)
chr2 (105-218)||(34006930-34007044)
chr2 (165-218)||(19573984-19574037)
[»] chr1 (12 HSPs)
chr1 (166-230)||(6573983-6574047)
chr1 (103-218)||(19637774-19637889)
chr1 (165-221)||(42004947-42005003)
chr1 (168-226)||(48415728-48415787)
chr1 (167-221)||(6936402-6936456)
chr1 (105-231)||(40747707-40747839)
chr1 (183-230)||(23440004-23440051)
chr1 (171-216)||(12040688-12040734)
chr1 (102-218)||(7988388-7988504)
chr1 (165-221)||(21145469-21145526)
chr1 (168-220)||(11634127-11634179)
chr1 (105-221)||(22794018-22794134)
[»] scaffold0778 (1 HSPs)
scaffold0778 (169-226)||(4404-4461)
[»] scaffold0598 (1 HSPs)
scaffold0598 (165-221)||(8053-8109)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 258
Target Start/End: Original strand, 35430976 - 35431233
Alignment:
Q  2 gtctcatatgtctgtaatgaaatgaattttctttctt-aaggcattatgttatgtataattttctaactatcataattgtgaccttcacgctacaggtta 100  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  35430976 gtctcatatgtctgtaatgaaatgaattttctttctttaaggcattatgttatgtataattttctaactatcataattgtgaccttcacgatacaggtta 35431075  T
Q  101 gaatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatca 200  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  35431076 gaatctatgaagcacagacactttttggattaggggtgtcctggtgttggatatgcatcgatgtccgacacgacacctatgattacactaaaatatgtca 35431175  T
Q  201 ttttcttaaattattatccgtttcggtgtctttatctgtattgtatatgatgtttgtg 258  Q
    |||||| |||||||||||||||||||| ||| | ||||| |||||| |||||| ||||    
T  35431176 ttttctcaaattattatccgtttcggtatctctgtctgtgttgtatctgatgtctgtg 35431233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 105 - 217
Target Start/End: Complemental strand, 39820547 - 39820436
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatttt 204  Q
    |||||||||||  |||||||| |||||||| |||||| | ||| ||| |||| ||| ||||||||||||||||||||||||||||||| |||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatttt 39820449  T
Q  205 cttaaattattat 217  Q
    || ||||||||||    
T  39820448 ctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 1676774 - 1676715
Alignment:
Q  162 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  1676774 tgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgt 1676715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 13009493 - 13009558
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 230  Q
    |||||||||||| ||||||||||||||| |||||  |||||| |||||||||||||| ||||||||    
T  13009493 ccgacacgacacttatgattacactaaattatattgttttctcaaattattatccgtgtcggtgtc 13009558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 13845291 - 13845241
Alignment:
Q  167 gacacgacacctatgattacactaaaatatatcattttcttaaattattat 217  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||||||||    
T  13845291 gacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 3658203 - 3658150
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    |||||||||||||||||||||| || || || ||||||| ||||||||||||||    
T  3658203 acacgacacctatgattacactgaactacattattttctcaaattattatccgt 3658150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 36450694 - 36450759
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac 171  Q
    |||||||||||| ||||| || |||||||| |||||||||||| ||| |||| ||| ||||||||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacacgcgtcg-tgtccgacac 36450759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 177
Target Start/End: Complemental strand, 44067644 - 44067574
Alignment:
Q  107 atgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacc 177  Q
    |||||||||  ||||| || | |||||| |||||||||||| ||| |||||||  ||||||||||||||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacacc 44067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 13436907 - 13436952
Alignment:
Q  102 aatctatgaagcacaaacacttcttggattaggggtgtcctggtgt 147  Q
    ||||||||||||||| ||||| ||||||||||| |||||| |||||    
T  13436907 aatctatgaagcacagacactccttggattaggcgtgtcccggtgt 13436952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 40064010 - 40063945
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 230  Q
    |||||||||| |||||||||||| | || ||| ||||||||| ||||||||||  || ||||||||    
T  40064010 ccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattattggtgtcggtgtc 40063945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 44067575 - 44067514
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    |||||||||||| ||| ||||||||  | ||| ||||||||| |||||||||||||| ||||    
T  44067575 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcgg 44067514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 30067968 - 30068084
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatttt 204  Q
    |||||||||||  |||||  | |||||||| ||||||  |||| ||| || | ||| | |||||| || |||||| ||||| ||| || ||| |||||||    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacacacgtcggtatccgactcggcacctacgattatactgaattatgtcatttt 30068067  T
Q  205 cttaaattattatccgt 221  Q
    || ||||||||||||||    
T  30068068 ctcaaattattatccgt 30068084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 33389295 - 33389367
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacc 177  Q
    |||||||||||  ||||||||||||||||| || |||  |||| ||| ||| |||| ||| ||||||||||||    
T  33389295 ctatgaagcaccgacacttcttggattaggtgtatcccagtgtcggacacgtatcggtgttcgacacgacacc 33389367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 103 - 221
Target Start/End: Complemental strand, 23752020 - 23751903
Alignment:
Q  103 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatt 202  Q
    |||||||||||||| |||||| | |||||||| |||||| | |||  || |||| ||| ||||||||||||||||||||||||||||||| |||||||||    
T  23752020 atctatgaagcacagacacttatcggattaggcgtgtcccg-tgtctgacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatt 23751922  T
Q  203 ttcttaaattattatccgt 221  Q
    || | ||||||||||||||    
T  23751921 ttatcaaattattatccgt 23751903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 29812664 - 29812729
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 230  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||  ||||||||    
T  29812664 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatacgggtcggtgtc 29812729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 12278941 - 12278841
Alignment:
Q  118 acacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 217  Q
    ||||| || |||||||| |||||| |||||  || |||| | | ||||||||||||||| ||| |||||||| || ||| ||||||||||||||||||||    
T  12278941 acactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacacgacacatataattacactgaattatgtcattttcttaaattattat 12278842  T
Q  218 c 218  Q
    |    
T  12278841 c 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 4017797 - 4017855
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    ||||||||| ||||||||||||||| |||||| |||||| |||||||||||||| ||||    
T  4017797 acacgacacttatgattacactaaattatatcgttttctcaaattattatccgtgtcgg 4017855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 22683758 - 22683820
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 230  Q
    ||||||||||||||||| |||| || |||||||| |||| |||||||||||||| ||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatccgtctcggtgtc 22683820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 23930278 - 23930222
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    ||||||| ||||||||||||||||| || ||| ||||||||| |||||| |||||||    
T  23930278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattactatccgt 23930222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 17780084 - 17780138
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatcc 219  Q
    |||||||||||||||| ||||||   || ||| ||||||||||||||||||||||    
T  17780084 ccgacacgacacctattattacatagaattatgtcattttcttaaattattatcc 17780138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 21138929 - 21139002
Alignment:
Q  103 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacc 177  Q
    ||||||||||||| |||||| | | ||||| | |||||||||||| ||| ||| ||| |||||||||||||||||    
T  21138929 atctatgaagcacgaacactcccttgattaagcgtgtcctggtgtcggacacgtatc-atgtccgacacgacacc 21139002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 38804558 - 38804616
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    ||||||||||||||||||| ||  | ||| ||||||||| |||||||||||||| ||||    
T  38804558 acacgacacctatgattaccctggattatgtcattttctgaaattattatccgtgtcgg 38804616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 216
Target Start/End: Complemental strand, 21880272 - 21880160
Alignment:
Q  104 tctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgaca-cgacacctatgattacactaaaatatatcatt 202  Q
    ||||||||||||  |||||||| |||||||| |||||||||||| ||| | |  ||| ||||||||| |||||| | | |||||||| || ||| | |||    
T  21880272 tctatgaagcacggacacttctcggattaggcgtgtcctggtgtcggacatgtgtcg-tgtccgacaccgacacttgtaattacactgaattatgtaatt 21880174  T
Q  203 ttcttaaattatta 216  Q
    |||| |||||||||    
T  21880173 ttctcaaattatta 21880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 43250052 - 43249991
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    |||||||||||| ||| ||||||||  | ||| ||||||||| |||||||||||||| ||||    
T  43250052 ccgacacgacacttataattacactgtattatgtcattttctcaaattattatccgtgtcgg 43249991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 7133278 - 7133342
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgt 229  Q
    |||||||  |||||||||||||||| || ||| ||||||||| ||||||| ||| || |||||||    
T  7133278 ccgacacaccacctatgattacactgaattatgtcattttctcaaattatcatctgtgtcggtgt 7133342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 221
Target Start/End: Original strand, 7997108 - 7997222
Alignment:
Q  107 atgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttct 206  Q
    ||||||||||||||||||| | |||||| |||||||| ||| ||| |||| ||  ||||||||||||||| ||| ||||||||  | |||||||||||||    
T  7997108 atgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatatcattttct 7997207  T
Q  207 taaattattatccgt 221  Q
     ||||||||||||||    
T  7997208 caaattattatccgt 7997222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 230
Target Start/End: Original strand, 39695999 - 39696064
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 230  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||| || || ||||||||    
T  39695999 ccgacacgacacctatgattacactaaattatatcattttctcaaattattgtcggtgtcggtgtc 39696064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 43554580 - 43554528
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 217  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  43554580 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 42469270 - 42469219
Alignment:
Q  175 acctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||| ||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatccgtgtcgg 42469219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 36577616 - 36577717
Alignment:
Q  109 gaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtc-----cgacacgacacctatgattacactaaaatatatcattt 203  Q
    |||||||| ||||||||||||||||| || ||| | ||| |||||||||||| ||||     ||||||||||| ||| |||| |||||| ||||||||||    
T  36577616 gaagcacagacacttcttggattaggcgtatcccg-tgtcggatacgcatcggtgtcgacaccgacacgacacatataattatactaaattatatcattt 36577714  T
Q  204 tct 206  Q
    |||    
T  36577715 tct 36577717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 2577193 - 2577247
Alignment:
Q  178 tatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtctt 232  Q
    ||||||||||||||| ||| ||||||||| ||||||||||| || ||||| ||||    
T  2577193 tatgattacactaaattatgtcattttctcaaattattatcggtgtcggtttctt 2577247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 18607099 - 18607161
Alignment:
Q  167 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgt 229  Q
    ||||||||||||||||||||| | || ||| | ||||||| |||||||||||| | |||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattatccatgtcggtgt 18607161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 217
Target Start/End: Complemental strand, 25863261 - 25863211
Alignment:
Q  167 gacacgacacctatgattacactaaaatatatcattttcttaaattattat 217  Q
    |||||||||| ||| |||||||| || ||||||||||||| ||||||||||    
T  25863261 gacacgacacttataattacactgaattatatcattttctcaaattattat 25863211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 224
Target Start/End: Original strand, 19737416 - 19737541
Alignment:
Q  100 agaatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgaca-cgacacctatgattacactaaaatatat 198  Q
    |||| |||||||||||||||||| ||  ||||||  ||||| |||||| |||||| ||| | ||||  ||| |||||| ||||||| || | || ||| |    
T  19737416 agaagctatgaagcacaaacactcctcagattagatgtgtcttggtgtcggatacacattggtgtcaaacaccgacacatatgattgcattgaattatgt 19737515  T
Q  199 cattttcttaaattattatccgtttc 224  Q
     ||||||| ||||||||||| |||||    
T  19737516 aattttctcaaattattatcggtttc 19737541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 216
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  167 gacacgacacctatgattacactaaaatatatcattttcttaaattatta 216  Q
    |||||||||| |||||||||||| || ||| ||||||||| |||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 3144585 - 3144717
Alignment:
Q  103 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtc------cgacacgacacctatgattacactaaaatat 196  Q
    |||||||||||||  |||||||| |||||||| ||||| | |||||||| |||| | | ||||      ||||||||||||||||||||||||||| |||    
T  3144585 atctatgaagcacggacacttctcggattaggtgtgtc-tcgtgttggacacgcgttggtgtctgacaccgacacgacacctatgattacactaaattat 3144683  T
Q  197 atcattttcttaaattattatccgtttcggtgtc 230  Q
    |||||||||| |||||||||||||| | ||||||    
T  3144684 atcattttctgaaattattatccgtgtaggtgtc 3144717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 39507059 - 39507173
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatttt 204  Q
    ||||||||||  |||||| || ||| |||| |||||  ||||| ||| ||| |||  |||||||||  ||||||||||||||||| || |||||||||||    
T  39507059 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacataacacctatgattacacttaattatatcatttt 39507158  T
Q  205 cttaaattattatcc 219  Q
    | |||||||||||||    
T  39507159 cataaattattatcc 39507173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 226
Target Start/End: Original strand, 20743278 - 20743339
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    ||||||| ||||||||||||||||| || ||| ||||||||| |||||||||||||| ||||    
T  20743278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcgg 20743339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 176
Target Start/End: Complemental strand, 17876285 - 17876214
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacac 176  Q
    |||||||||||| ||||| ||||||||||| |||||||||||| ||| | || ||| |||| ||||||||||    
T  17876285 ctatgaagcacagacactccttggattaggtgtgtcctggtgtcggacaagcgtcggtgtctgacacgacac 17876214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 23386205 - 23386143
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatca-ttttcttaaattattatccgtttcgg 226  Q
    |||||| ||||||||||||||||||||| ||||||| |||| ||||||||| |||||| ||||    
T  23386205 ccgacatgacacctatgattacactaaattatatcattttttttaaattatcatccgtatcgg 23386143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 24343566 - 24343505
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    |||||||||||||||| |||||||| || ||| | ||||||| |||||||||||||| ||||    
T  24343566 ccgacacgacacctataattacactgaattatgtaattttctcaaattattatccgtgtcgg 24343505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 31243548 - 31243600
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 217  Q
    |||||| |||||||||||||||||| || ||| ||||||||| ||||||||||    
T  31243548 ccgacatgacacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 226
Target Start/End: Original strand, 46971904 - 46971960
Alignment:
Q  170 acgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    |||||||||||||| ||| |||||||| ||||| ||| |||||||||||||| ||||    
T  46971904 acgacacctatgataacagtaaaatatgtcattatctcaaattattatccgtgtcgg 46971960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 215
Target Start/End: Original strand, 49659533 - 49659573
Alignment:
Q  175 acctatgattacactaaaatatatcattttcttaaattatt 215  Q
    |||||||||||||||||| ||||||||||||| ||||||||    
T  49659533 acctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 215
Target Start/End: Complemental strand, 6274003 - 6273953
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattatt 215  Q
    ||||||||||  |||| ||||||||||| ||||||||||||| ||||||||    
T  6274003 ccgacacgacgactataattacactaaattatatcattttctcaaattatt 6273953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 34515881 - 34515930
Alignment:
Q  172 gacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    |||||||||| ||||||| || ||| |||||||||| |||||||||||||    
T  34515881 gacacctatgtttacactgaattatgtcattttcttgaattattatccgt 34515930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 47191001 - 47191058
Alignment:
Q  173 acacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 230  Q
    ||||||| |||||||||||| ||| ||||||||  |||||||||||| | ||||||||    
T  47191001 acacctaggattacactaaattatgtcattttcgcaaattattatccatgtcggtgtc 47191058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 7424716 - 7424676
Alignment:
Q  178 tatgattacactaaaatatatcattttcttaaattattatc 218  Q
    |||||||||||| || ||||| |||||||||||||||||||    
T  7424716 tatgattacactcaattatattattttcttaaattattatc 7424676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 53968605 - 53968553
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattat 217  Q
    ||||||||||| |||||||  |||| || ||| ||||||||||||||||||||    
T  53968605 ccgacacgacatctatgatatcactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 6389802 - 6389741
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||    
T  6389802 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatccgtgtcgg 6389741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 221
Target Start/End: Original strand, 12235462 - 12235575
Alignment:
Q  108 tgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttctt 207  Q
    ||||||||  |||||| ||||||||||||||||| ||||  ||| || | ||| |||| ||||||||||||||||||||||| || ||| |||||||||     
T  12235462 tgaagcacggacactttttggattaggggtgtcccggtgccggacacacgtcggtgtcggacacgacacctatgattacactgaattatgtcattttctc 12235561  T
Q  208 aaattattatccgt 221  Q
     |||||||||||||    
T  12235562 taattattatccgt 12235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 26247485 - 26247429
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    ||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||    
T  26247485 ccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatccgt 26247429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 34446690 - 34446568
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgt------ccgacacgacacctatgattacactaaaatatat 198  Q
    |||||||||||  ||||| ||||||||||| ||||||  ||||  ||||||| ||| |||      ||||||||||||||||||||||||| || ||| |    
T  34446690 ctatgaagcacggacactccttggattaggtgtgtcccagtgtcagatacgcgtcggtgttggacaccgacacgacacctatgattacactgaattatgt 34446591  T
Q  199 cattttcttaaattattatccgt 221  Q
    |||||||| ||||||||||||||    
T  34446590 cattttctcaaattattatccgt 34446568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 17168463 - 17168516
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    |||||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  17168463 ccgacacgacacctattattacactaaattatatcattttctcaaattattatc 17168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 2153893 - 2153937
Alignment:
Q  171 cgacacctatgattacactaaaatatatcattttcttaaattatt 215  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||    
T  2153893 cgacacctataattacactaaattatatcattttcttaaattatt 2153937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 216
Target Start/End: Complemental strand, 33419292 - 33419181
Alignment:
Q  106 tatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgaca-cgacacctatgattacactaaaatatatcatttt 204  Q
    ||||||||||||| |||||||||||||||  ||||||||||||||| |||| | | |||| |||| | |||| ||| |||||| | || ||||||| |||    
T  33419292 tatgaagcacaaatacttcttggattaggcatgtcctggtgttggacacgcgttggtgtctgacaccaacacatataattacattgaattatatcaattt 33419193  T
Q  205 cttaaattatta 216  Q
     | |||||||||    
T  33419192 ttcaaattatta 33419181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 12086344 - 12086401
Alignment:
Q  164 tccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    |||||||||||||||||||||| ||| || ||| ||||| ||| ||||||||||||||    
T  12086344 tccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgt 12086401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 13689190 - 13689259
Alignment:
Q  162 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtct 231  Q
    |||||||||||| ||||||||||||| | |||| | | ||||||| ||||||||||| || |||||||||    
T  13689190 tgtccgacacgatacctatgattacattgaaatttgttattttctcaaattattatctgtgtcggtgtct 13689259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 19602181 - 19602234
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    ||||||| | ||||||||||||||| || ||||||||||||| |||||||||||    
T  19602181 ccgacacaatacctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 6299567 - 6299517
Alignment:
Q  169 cacgacacctatgattacactaaaatatatcattttcttaaattattatcc 219  Q
    |||||||||||| |||||| | || ||||||||||||| ||||||||||||    
T  6299567 cacgacacctatcattacattgaattatatcattttctcaaattattatcc 6299517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 6306377 - 6306327
Alignment:
Q  169 cacgacacctatgattacactaaaatatatcattttcttaaattattatcc 219  Q
    |||||||||||| |||||| | || ||||||||||||| ||||||||||||    
T  6306377 cacgacacctatcattacattgaattatatcattttctcaaattattatcc 6306327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 7625170 - 7625125
Alignment:
Q  176 cctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    ||||| |||| |||||| ||||||||||||| ||||||||||||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgt 7625125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 231
Target Start/End: Complemental strand, 14819691 - 14819654
Alignment:
Q  194 tatatcattttcttaaattattatccgtttcggtgtct 231  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  14819691 tatatcagtttcttaaattattatccgtgtcggtgtct 14819654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 226
Target Start/End: Complemental strand, 15864895 - 15864831
Alignment:
Q  162 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    ||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| ||||    
T  15864895 tgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatccgtgtcgg 15864831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 226
Target Start/End: Original strand, 24204983 - 24205102
Alignment:
Q  107 atgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttct 206  Q
    |||||||||  ||||| || | |||||| |||||||||||| ||| |||| ||  ||||||||||||||| ||| ||||||||  | ||| |||||||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttct 24205082  T
Q  207 taaattattatccgtttcgg 226  Q
     |||||||||||||| ||||    
T  24205083 caaattattatccgtgtcgg 24205102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 226
Target Start/End: Complemental strand, 25892517 - 25892458
Alignment:
Q  167 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    ||||||||||||||||||||||| || ||||||||||||||||||||||||  |||||||    
T  25892517 gacacgacacctatgattacactgaattatatcattttcttaaattattatttgtttcgg 25892458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 25365580 - 25365467
Alignment:
Q  106 tatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttc 205  Q
    ||||||||||| ||| | ||  ||||||| |||||||||||| | | || ||||| ||||||||||||||| |||||||||||  || ||| |||| |||    
T  25365580 tatgaagcacatacattcctcagattaggcgtgtcctggtgtcgaacacacatcggtgtccgacacgacacttatgattacaccgaattatgtcatattc 25365481  T
Q  206 ttaaattattatcc 219  Q
    | ||||||||||||    
T  25365480 tcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 117 - 217
Target Start/End: Complemental strand, 26665243 - 26665143
Alignment:
Q  117 aacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcattttcttaaattatta 216  Q
    |||||| |||| ||||||||||| ||||||| ||| |||| ||| ||||||||||||| ||||| |||||| | ||  |  ||||||||| |||||||||    
T  26665243 aacactccttgaattaggggtgttctggtgtcggacacgcttcggtgtccgacacgacgcctataattacagtgaatcacgtcattttctcaaattatta 26665144  T
Q  217 t 217  Q
    |    
T  26665143 t 26665143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 221
Target Start/End: Complemental strand, 21211413 - 21211291
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtc------cgacacgacacctatgattacactaaaatatat 198  Q
    |||||||||||||||||| || |||||||| ||||||  |||| ||| |||| ||| ||||      |||||||||||| || |||||||| || ||| |    
T  21211413 ctatgaagcacaaacactcctcggattaggagtgtcccagtgtcggacacgcgtcggtgtcgaacaccgacacgacacccataattacactgaactatgt 21211314  T
Q  199 cattttcttaaattattatccgt 221  Q
     ||||||| ||||||||||||||    
T  21211313 aattttctcaaattattatccgt 21211291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 1830397 - 1830351
Alignment:
Q  170 acgacacctatgattacactaaaatatatcattttcttaaattatta 216  Q
    |||||||||||||||||||| || ||| |||||||||||||||||||    
T  1830397 acgacacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 34189483 - 34189433
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    |||||||||||| ||||||||| |||||| ||||||||| |||||||||||    
T  34189483 acacgacacctacgattacactgaaatatgtcattttctcaaattattatc 34189433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 217
Target Start/End: Original strand, 3730105 - 3730217
Alignment:
Q  102 aatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcat 201  Q
    |||||||||||||   ||||| || |||||||| |||||| ||||   || | |||| | |||| ||||||||||||||||||||||| || ||| ||||    
T  3730105 aatctatgaagcatggacactcctcggattaggtgtgtcccggtg---gacatgcattggtgtcagacacgacacctatgattacactgaattatgtcat 3730201  T
Q  202 tttcttaaattattat 217  Q
    | ||| ||||||||||    
T  3730202 tatctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 14223853 - 14223906
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    |||||||||||| ||||| ||||||||| |||||| |||||| |||||||||||    
T  14223853 ccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatc 14223906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 8903489 - 8903430
Alignment:
Q  166 cgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    ||||||||||||||| |||||||| |||||| ||||||||| ||| |||||||||| ||||    
T  8903489 cgacacgacacctataattacact-aaatatgtcattttctcaaaatattatccgtgtcgg 8903430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 12704657 - 12704713
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    ||||||||||||||||||||||| | || ||| ||||||| | ||||||||||||||    
T  12704657 ccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgt 12704713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 174
Target Start/End: Complemental strand, 7949092 - 7949015
Alignment:
Q  96 ggttagaatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgac 174  Q
    ||||| ||||| ||||||||||| |||  | | |||||| |||||||||||||||||||  ||| ||||||||||||||    
T  7949092 ggttataatctctgaagcacaaatactcatcgtattaggtgtgtcctggtgttggatacaaatc-atgtccgacacgac 7949015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 17005548 - 17005590
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgt 147  Q
    |||||||||||||||||| || ||||||| |||||||||||||    
T  17005548 ctatgaagcacaaacactcctcggattagaggtgtcctggtgt 17005590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 25326482 - 25326432
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    |||||||| |||| ||||||||||| ||||| ||||| |||||||||||||    
T  25326482 acacgacatctataattacactaaattatattatttttttaaattattatc 25326432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 25652033 - 25652087
Alignment:
Q  167 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    ||||| |||||||| | |||||| || ||||||||||||| ||||||||||||||    
T  25652033 gacacaacacctataactacactgaattatatcattttctcaaattattatccgt 25652087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 219
Target Start/End: Complemental strand, 52369834 - 52369780
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatcc 219  Q
    ||||||||||||||||||||||| | || ||| | ||||||| ||||||||||||    
T  52369834 ccgacacgacacctatgattacattgaattatgtaattttctcaaattattatcc 52369780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 20691372 - 20691319
Alignment:
Q  171 cgacacctatgattacactaaaatatatcattttcttaaattattatccgtttc 224  Q
    |||||| |||||||||||| || ||| ||||||||| ||||||||||| |||||    
T  20691372 cgacacatatgattacactgaattatgtcattttctcaaattattatcagtttc 20691319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 25074848 - 25074795
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    ||||||| || |||||||||||||| || ||| ||||||||| |||||||||||    
T  25074848 ccgacacaacgcctatgattacactcaattatgtcattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 25211648 - 25211607
Alignment:
Q  106 tatgaagcacaaacacttcttggattaggggtgtcctggtgt 147  Q
    ||||||||||||||||||||  ||||||| ||||||||||||    
T  25211648 tatgaagcacaaacacttctcagattaggcgtgtcctggtgt 25211607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 27903691 - 27903638
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    ||||||| |||| |||||||||| |||| |||||| |||||| |||||||||||    
T  27903691 ccgacacaacacttatgattacattaaattatatcgttttctcaaattattatc 27903638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 12100331 - 12100264
Alignment:
Q  162 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 230  Q
    |||| |||||||||||||| |||||||| || ||||||| ||| | |||||||||| || |||||||||    
T  12100331 tgtcagacacgacacctattattacactgaattatatca-tttgtcaaattattatgcgattcggtgtc 12100264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 221
Target Start/End: Complemental strand, 2011 - 1952
Alignment:
Q  162 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  2011 tgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgt 1952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 23354652 - 23354705
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  23354652 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 165 - 230
Target Start/End: Complemental strand, 25544540 - 25544475
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 230  Q
    ||||||||||||||||||||||||| || ||||||||||||| |||||||||| ||| ||||||||    
T  25544540 ccgacacgacacctatgattacactgaattatatcattttctcaaattattatacgtgtcggtgtc 25544475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 168 - 229
Target Start/End: Complemental strand, 38919262 - 38919201
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgt 229  Q
    ||||||||||||||||||||||||| |||| |||||||| ||||||||||| || |||||||    
T  38919262 acacgacacctatgattacactaaactataacattttctcaaattattatctgtatcggtgt 38919201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 219
Target Start/End: Complemental strand, 12748746 - 12748689
Alignment:
Q  162 tgtccgacacgacacctatgattacactaaaatatatcattttcttaaattattatcc 219  Q
    |||||||||| ||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  12748746 tgtccgacacaacacctatgattacactgaactatgtcattttctcaaattattatcc 12748689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Original strand, 23354995 - 23355048
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    |||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||    
T  23354995 ccgacatgacacctatgattgcactaaattatatcattttctcaaattattatc 23355048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 24011095 - 24011042
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    ||||| |||||||||||||||||||||| ||| ||||||||| |||||||||||    
T  24011095 ccgacgcgacacctatgattacactaaattatgtcattttctcaaattattatc 24011042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 30563540 - 30563474
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac 171  Q
    |||||||||||||  ||| |||||||||||| ||||||||||| |||||||| | | ||||||||||    
T  30563540 ctatgaagcacaagtactccttggattagggttgtcctggtgtcggatacgcctgggtgtccgacac 30563474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 37986835 - 37986785
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    |||||| ||||||||||||||| |||||||||||||| | |||||||||||    
T  37986835 acacgatacctatgattacactcaaatatatcattttttcaaattattatc 37986785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 18571068 - 18570978
Alignment:
Q  128 gattaggggtgtcctggtgttggatacgcatcgatgtccgacac-gacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    ||||||| |||||||||||| ||||| | |||| ||| |||||| ||||| |||||||||| | || ||| ||||||||| |||||||||||    
T  18571068 gattaggcgtgtcctggtgtcggatatgtatcg-tgttcgacactgacacatatgattacattgaattatgtcattttctcaaattattatc 18570978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 22085066 - 22085011
Alignment:
Q  163 gtccgacac-gacacctatgattacactaaaatatatcattttcttaaattattat 217  Q
    ||||||||| |||||  |||||||||||||| ||| ||||||||||||||||||||    
T  22085066 gtccgacaccgacacaaatgattacactaaattatgtcattttcttaaattattat 22085011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 10535762 - 10535812
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    ||||||||| |||||||||||| || ||| ||||||||| |||||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatc 10535812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 165 - 227
Target Start/End: Original strand, 11308004 - 11308065
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggt 227  Q
    ||||||||||||||||||||||||| || ||| ||||||| | |||||| ||||||| |||||    
T  11308004 ccgacacgacacctatgattacactgaattatgtcattttttcaaatta-tatccgtgtcggt 11308065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 218
Target Start/End: Original strand, 34006930 - 34007044
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac-gacacctatgattacactaaaatatatcattt 203  Q
    |||||||||||  ||||| |||| |||||| |||| | |||||  || ||| || | ||||| |||| |||||||||||||||||| || ||| ||| ||    
T  34006930 ctatgaagcacggacactccttgaattaggtgtgttccggtgtcagacacgaataggtgtcccacaccgacacctatgattacactgaattatgtcaatt 34007029  T
Q  204 tcttaaattattatc 218  Q
    ||| |||||||||||    
T  34007030 tctcaaattattatc 34007044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 218
Target Start/End: Complemental strand, 19574037 - 19573984
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatc 218  Q
    |||||||| ||||||| |||||||| || ||| | |||||||||||||||||||    
T  19574037 ccgacacgccacctataattacactgaattatgttattttcttaaattattatc 19573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 6574047 - 6573983
Alignment:
Q  166 cgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcggtgtc 230  Q
    |||||| |||||||||||||||||||| ||||||||| ||| ||||||| |||||| ||||||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattatcatccgtgtcggtgtc 6573983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 103 - 218
Target Start/End: Complemental strand, 19637889 - 19637774
Alignment:
Q  103 atctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac-gacacctatgattacactaaaatatatcat 201  Q
    |||||||| ||||||| ||| || |||||||||| |||| ||||| ||||| | |||| |||||||||| ||||| |||||||||| | ||  || ||||    
T  19637889 atctatgatgcacaaatactcctcggattaggggcgtcccggtgtcggatatgtatcg-tgtccgacaccgacacatatgattacattgaataatgtcat 19637791  T
Q  202 tttcttaaattattatc 218  Q
    |||||||||||||||||    
T  19637790 tttcttaaattattatc 19637774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 42004947 - 42005003
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    ||||||| |||||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  42004947 ccgacacaacacctatgattacactaaattatgtcattttctcaaattattatccgt 42005003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 48415728 - 48415787
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttctt-aaattattatccgtttcgg 226  Q
    |||||||| |||||||||||||||| ||||||||||| || |||||||||||||| ||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatccgtgtcgg 48415787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 6936402 - 6936456
Alignment:
Q  167 gacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    ||||||||||||||||||||||| || ||| ||||||||| | ||||||||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatccgt 6936456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 40747707 - 40747839
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacac------gacacctatgattacactaaaatatat 198  Q
    |||||||||||  || || || |||||||||||||||  |||| ||| | | |||| ||||||||||      ||||||||| |||||| | || ||| |    
T  40747707 ctatgaagcacggacgctcctcggattaggggtgtccctgtgtgggacatggatcggtgtccgacaccaacatgacacctataattacattgaattatgt 40747806  T
Q  199 cattttcttaaattattatccgtttcggtgtct 231  Q
    |||||||| |||||||||||||| |||||||||    
T  40747807 cattttctcaaattattatccgtgtcggtgtct 40747839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 230
Target Start/End: Complemental strand, 23440051 - 23440004
Alignment:
Q  183 ttacactaaaatatatcattttcttaaattattatccgtttcggtgtc 230  Q
    |||||||||| ||||||||||||| |||||||||| ||| ||||||||    
T  23440051 ttacactaaattatatcattttctcaaattattatacgtgtcggtgtc 23440004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 12040688 - 12040734
Alignment:
Q  171 cgacacctatgattacactaaaat-atatcattttcttaaattatta 216  Q
    ||||||||||||||| ||| |||| ||||||||||||||||||||||    
T  12040688 cgacacctatgattatactgaaattatatcattttcttaaattatta 12040734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 218
Target Start/End: Original strand, 7988388 - 7988504
Alignment:
Q  102 aatctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacga-cacctatgattacactaaaatatatca 200  Q
    ||||||||||||||| | ||| |||||| |||   |||| |||||||| ||||| || | |||||||||| | ||| |||||||||| | || ||| |||    
T  7988388 aatctatgaagcacataaactccttggactagacatgtcatggtgttgaatacgtattg-tgtccgacaccaacacttatgattacattgaattatgtca 7988486  T
Q  201 ttttcttaaattattatc 218  Q
     |||||||||||||||||    
T  7988487 ctttcttaaattattatc 7988504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 21145526 - 21145469
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttctt-aaattattatccgt 221  Q
    |||||||||| |||||||||||||| || ||| ||||||| || ||||||||||||||    
T  21145526 ccgacacgacgcctatgattacactgaattatgtcatttttttcaaattattatccgt 21145469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 11634127 - 11634179
Alignment:
Q  168 acacgacacctatgattacactaaaatatatcattttcttaaattattatccg 220  Q
    |||||||||||||||||||| |||| ||| |  |||||| |||||||||||||    
T  11634127 acacgacacctatgattacattaaattatgttgttttctcaaattattatccg 11634179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 221
Target Start/End: Original strand, 22794018 - 22794134
Alignment:
Q  105 ctatgaagcacaaacacttcttggattaggggtgtcctggtgttggatacgcatcgatgtccgacacgacacctatgattacactaaaatatatcatttt 204  Q
    |||||||||||  ||||| || | |||||| |||||| || || ||| | || ||  |||| |||||||||||||| ||||||||  | ||| |||||||    
T  22794018 ctatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggacatgcgtcagtgtcggacacgacacctataattacactgtattatgtcatttt 22794117  T
Q  205 cttaaattattatccgt 221  Q
     | ||||||||||||||    
T  22794118 ttcaaattattatccgt 22794134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 169 - 226
Target Start/End: Complemental strand, 4461 - 4404
Alignment:
Q  169 cacgacacctatgattacactaaaatatatcattttcttaaattattatccgtttcgg 226  Q
    ||||||| ||||||| ||||| || |||||||| |||||||||||||||| |||||||    
T  4461 cacgacatctatgatgacactgaattatatcatattcttaaattattatctgtttcgg 4404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 8053 - 8109
Alignment:
Q  165 ccgacacgacacctatgattacactaaaatatatcattttcttaaattattatccgt 221  Q
    ||||||||| ||||||| ||||||| || ||| ||||||||| ||||||||||||||    
T  8053 ccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatccgt 8109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University