View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18965_high_2 (Length: 454)
Name: NF18965_high_2
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 7 - 437
Target Start/End: Original strand, 2056357 - 2056770
Alignment:
| Q |
7 |
ataattcgctacactaacctataccaaaaaccgtgcatcccgctttagtaattatcgggttaactcttacactacaatccatatgaagttaaactgcctt |
106 |
Q |
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| T |
2056357 |
ataattcgctacactaacctataccaaaaaccttgcatcccgctttagtaattatcgggttaactcttacactacaatccatatgaagttgaactgcctt |
2056456 |
T |
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| Q |
107 |
tgaccacaagaccaagccaactccaagcaaatgtttcacccacttaaactacattacaaatatttagcatcaaaatatgcggacgctaattagagaatta |
206 |
Q |
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| T |
2056457 |
tgaccacaagaccaagccaactccaagcaaatgtttcacccacttaaactacattacaaatatttagcatcaaaatatgtggacgctaattagagaatta |
2056556 |
T |
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| Q |
207 |
aatcaaaaatatcagcgtctacctgacctgatgctaaattgtgtataaaatggattggaaaaatgcatttgcatcagaattagtggacgctaaattgcaa |
306 |
Q |
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| T |
2056557 |
aatcaaaaatatcagcgtctacctgacctgatgctaaattgtgtaaaaaatggattggaaaaatgcatttgcatcagaattagtggacgctaaattgcaa |
2056656 |
T |
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| Q |
307 |
ttttattacacttaatgtgaagtaactggtttcactaattatgtttcctttagttgcattttaagcattgaacttgatttagtaattaacaaaccatacg |
406 |
Q |
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| T |
2056657 |
ttttattacacttaatgtgaagtaactggtttcactaattatgtttcctttagttgcattttaagcattg-----------------aacaaaccatacg |
2056739 |
T |
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| Q |
407 |
cttgtccctttgatgtgtactacacatgaaa |
437 |
Q |
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| T |
2056740 |
cttgtccctttgatgtgtactacacatgaaa |
2056770 |
T |
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