View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18965_high_8 (Length: 322)
Name: NF18965_high_8
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 314
Target Start/End: Original strand, 31548390 - 31548677
Alignment:
| Q |
20 |
aagagcactttgtacaagctgtgaaacttctacaaaaacttcttcttgtgatacgtcttgtataaaaactttatcaaatttaaaagaatgcttctggcct |
119 |
Q |
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| T |
31548390 |
aagagcactttgcacaagctgtgaaacttctacaaacacttcttcttgtgatatgtcttgtataaaaactttatcaaatttaaaagaatgcttctggcct |
31548489 |
T |
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| Q |
120 |
aaaaacaaaataggagtcacatgagttgccaatttaataagatcataactaaaacaatcatagaaaaataagaaaaattatactttcaagtttcaaatac |
219 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
31548490 |
aaaaacaaaataggagtcacacgagttgccaatttaataagatcataactaaaacaatcatagaaaaataagaaaaattatac-------tttcaaatac |
31548582 |
T |
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| Q |
220 |
atcatcataacagatataccattttgggctaggtcaattcctcgtccagaactttccattgataatggataactgaatatcttgccttctgtgct |
314 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31548583 |
atcatcacaacagatataccattttgggctaggtcaattcctcgtccagaagtttccattgatgatggataactgaatatcttgccttctgtgct |
31548677 |
T |
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