View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18965_low_10 (Length: 310)

Name: NF18965_low_10
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18965_low_10
NF18965_low_10
[»] chr4 (2 HSPs)
chr4 (120-225)||(24364412-24364517)
chr4 (15-121)||(24364547-24364652)
[»] chr5 (2 HSPs)
chr5 (247-303)||(39076154-39076210)
chr5 (32-83)||(11469695-11469746)
[»] chr1 (3 HSPs)
chr1 (34-109)||(12659632-12659707)
chr1 (61-121)||(50164022-50164083)
chr1 (61-105)||(25010330-25010374)
[»] chr8 (1 HSPs)
chr8 (61-110)||(9291247-9291297)
[»] chr6 (1 HSPs)
chr6 (61-119)||(26219432-26219490)
[»] chr3 (1 HSPs)
chr3 (15-55)||(17648491-17648531)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 120 - 225
Target Start/End: Complemental strand, 24364517 - 24364412
Alignment:
Q  120 agcttctttagtttgaatggtatggggtgcaggtacaactgaaggggtatgaggtaaaatcttcctctggtctgatagactgagagagaacggaatatgg 219  Q
    ||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  24364517 agcttctctagtttgaatggtagggggtgcaggtacaattgaaggggtatgaggtaaaatcttcctctggtctgatagactgagagagaacggcatatgg 24364418  T
Q  220 gataca 225  Q
    ||||||    
T  24364417 gataca 24364412  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 24364652 - 24364547
Alignment:
Q  15 cctacaacatttcaaattatataatccaaaatgtgtaaaaatacgctaaaaacatcctccaactccctacattttttcggatttcataatccaaaccagg 114  Q
    |||||||||||||  || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  24364652 cctacaacatttcggat-atataatccaaaatgtgtaaaaatactctaaaaacatcctccaactccctacattttttcagatttcataatccaaaccagg 24364554  T
Q  115 tgtggag 121  Q
    |||||||    
T  24364553 tgtggag 24364547  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 247 - 303
Target Start/End: Complemental strand, 39076210 - 39076154
Alignment:
Q  247 ctgcggctgcaattggtcttagataaatgatgaaattgaaaatgatggtgatgatgt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39076210 ctgcggctgcaattggtcttagataaatgatgaaattgaaaatgatggtgatgatgt 39076154  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 11469746 - 11469695
Alignment:
Q  32 tatataatccaaaatgtgtaaaaatacgctaaaaacatcctccaactcccta 83  Q
    ||||||||| |||| ||||||||||||| |||||||| |||||||| |||||    
T  11469746 tatataatctaaaaggtgtaaaaatacgttaaaaacaccctccaacacccta 11469695  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 12659632 - 12659707
Alignment:
Q  34 tataatccaaaatgtgtaaaaatacgctaaaaacatcctccaactccctacattttttcggatttcataatccaaa 109  Q
    ||||||| ||||||| |||||||| | |||||||||||| |||| | | ||||||||||  |||||||||||||||    
T  12659632 tataatcaaaaatgtataaaaatatgttaaaaacatccttcaacactcaacattttttccaatttcataatccaaa 12659707  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 50164022 - 50164083
Alignment:
Q  61 taaaaacatcctccaactccctacattttttcgga-tttcataatccaaaccaggtgtggag 121  Q
    |||||||||| ||| || || ||||||||||| || |||||||||||||| |||||||||||    
T  50164022 taaaaacatcttcctacgccttacattttttccgaatttcataatccaaatcaggtgtggag 50164083  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 25010330 - 25010374
Alignment:
Q  61 taaaaacatcctccaactccctacattttttcggatttcataatc 105  Q
    |||||||| | |||||| |||||||||||||| ||||||||||||    
T  25010330 taaaaacaccttccaacaccctacattttttcagatttcataatc 25010374  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 9291247 - 9291297
Alignment:
Q  61 taaaaacatcctccaac-tccctacattttttcggatttcataatccaaac 110  Q
    |||||||| |||||||| |||||||| ||||||| ||||||||||||||||    
T  9291247 taaaaacaccctccaacatccctacagtttttcgaatttcataatccaaac 9291297  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 119
Target Start/End: Original strand, 26219432 - 26219490
Alignment:
Q  61 taaaaacatcctccaactccctacattttttcggatttcataatccaaaccaggtgtgg 119  Q
    |||||||||||| ||||  |||||||||||| ||||||||||| |||||  ||||||||    
T  26219432 taaaaacatcctacaacgacctacatttttttggatttcataacccaaagaaggtgtgg 26219490  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 17648491 - 17648531
Alignment:
Q  15 cctacaacatttcaaattatataatccaaaatgtgtaaaaa 55  Q
    |||||||||||| | |||||||||||||||| |||||||||    
T  17648491 cctacaacattttagattatataatccaaaaggtgtaaaaa 17648531  T

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