View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18965_low_12 (Length: 293)

Name: NF18965_low_12
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18965_low_12
NF18965_low_12
[»] chr1 (20 HSPs)
chr1 (18-282)||(31165773-31166038)
chr1 (85-281)||(15183610-15183807)
chr1 (93-282)||(39984743-39984932)
chr1 (85-281)||(31064938-31065139)
chr1 (93-282)||(35306997-35307186)
chr1 (85-282)||(14579178-14579373)
chr1 (98-282)||(27458397-27458574)
chr1 (96-236)||(11581532-11581674)
chr1 (101-285)||(26801356-26801540)
chr1 (87-204)||(6568062-6568179)
chr1 (160-282)||(2765459-2765580)
chr1 (85-209)||(15939330-15939455)
chr1 (93-210)||(20710743-20710860)
chr1 (85-194)||(15947709-15947819)
chr1 (85-194)||(28292496-28292606)
chr1 (19-63)||(39984689-39984735)
chr1 (124-183)||(42241865-42241924)
chr1 (19-48)||(15183565-15183594)
chr1 (99-184)||(46798161-46798246)
chr1 (22-50)||(11581701-11581729)
[»] chr8 (19 HSPs)
chr8 (85-282)||(11175474-11175671)
chr8 (95-282)||(15175058-15175242)
chr8 (85-282)||(35170921-35171118)
chr8 (93-282)||(31447015-31447204)
chr8 (93-266)||(1824241-1824413)
chr8 (93-266)||(1858686-1858858)
chr8 (99-184)||(9555212-9555297)
chr8 (85-277)||(10839910-10840101)
chr8 (176-282)||(43120648-43120754)
chr8 (93-200)||(4606076-4606180)
chr8 (93-186)||(16816200-16816293)
chr8 (98-245)||(45537807-45537953)
chr8 (240-282)||(26600990-26601032)
chr8 (105-160)||(26601066-26601121)
chr8 (99-280)||(26916071-26916252)
chr8 (117-178)||(40112831-40112892)
chr8 (18-60)||(35171122-35171164)
chr8 (93-183)||(43915639-43915729)
chr8 (19-65)||(9555310-9555358)
[»] chr6 (5 HSPs)
chr6 (85-282)||(2391487-2391684)
chr6 (96-282)||(11785742-11785926)
chr6 (93-282)||(11751943-11752130)
chr6 (86-279)||(10479504-10479697)
chr6 (99-211)||(10629023-10629134)
[»] chr3 (15 HSPs)
chr3 (95-282)||(8795545-8795731)
chr3 (93-282)||(16194082-16194271)
chr3 (93-282)||(18680622-18680810)
chr3 (85-250)||(42339888-42340053)
chr3 (85-281)||(29306320-29306506)
chr3 (93-279)||(43369911-43370093)
chr3 (85-199)||(33282882-33282996)
chr3 (149-204)||(34629913-34629968)
chr3 (85-199)||(47731178-47731292)
chr3 (85-199)||(36260998-36261112)
chr3 (150-199)||(39028813-39028862)
chr3 (132-199)||(28763177-28763244)
chr3 (133-186)||(7579541-7579594)
chr3 (19-65)||(33282521-33282569)
chr3 (99-199)||(30299579-30299678)
[»] chr4 (17 HSPs)
chr4 (93-282)||(5750584-5750772)
chr4 (99-282)||(867625-867812)
chr4 (93-279)||(56094123-56094311)
chr4 (169-282)||(35292995-35293108)
chr4 (93-281)||(24195003-24195191)
chr4 (186-278)||(42679350-42679442)
chr4 (85-180)||(48546755-48546850)
chr4 (150-211)||(23480646-23480707)
chr4 (93-184)||(48685615-48685706)
chr4 (137-282)||(51983474-51983621)
chr4 (150-282)||(18742940-18743073)
chr4 (150-186)||(26003923-26003959)
chr4 (99-142)||(24273919-24273962)
chr4 (170-211)||(2819027-2819068)
chr4 (99-183)||(3161389-3161474)
chr4 (150-199)||(7556087-7556136)
chr4 (99-211)||(56361138-56361250)
[»] chr2 (16 HSPs)
chr2 (85-282)||(5187741-5187938)
chr2 (85-279)||(21436886-21437080)
chr2 (85-282)||(9298601-9298797)
chr2 (85-282)||(18704551-18704748)
chr2 (99-282)||(10221654-10221838)
chr2 (85-199)||(1130599-1130712)
chr2 (99-186)||(931122-931209)
chr2 (85-245)||(37817735-37817896)
chr2 (150-245)||(9158622-9158717)
chr2 (133-282)||(17200717-17200866)
chr2 (105-186)||(21508797-21508878)
chr2 (100-171)||(25318858-25318929)
chr2 (85-142)||(83834-83891)
chr2 (87-199)||(35716390-35716502)
chr2 (156-228)||(41437292-41437363)
chr2 (223-279)||(43080850-43080906)
[»] chr5 (9 HSPs)
chr5 (93-279)||(16600322-16600508)
chr5 (94-282)||(33401632-33401813)
chr5 (90-282)||(5474042-5474234)
chr5 (93-193)||(932487-932587)
chr5 (189-279)||(10099639-10099729)
chr5 (169-241)||(22001364-22001436)
chr5 (93-211)||(27499436-27499553)
chr5 (150-186)||(278977-279013)
chr5 (150-210)||(5552412-5552472)
[»] scaffold0001 (1 HSPs)
scaffold0001 (93-272)||(508227-508406)
[»] chr7 (10 HSPs)
chr7 (88-279)||(34596051-34596242)
chr7 (99-257)||(29408000-29408158)
chr7 (85-250)||(47084741-47084905)
chr7 (85-188)||(39983528-39983634)
chr7 (93-199)||(32297350-32297455)
chr7 (99-199)||(32450394-32450494)
chr7 (95-184)||(30053681-30053770)
chr7 (150-277)||(32438047-32438174)
chr7 (85-199)||(33407327-33407441)
chr7 (99-180)||(19048495-19048576)
[»] scaffold0100 (1 HSPs)
scaffold0100 (150-279)||(39143-39272)


Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 282
Target Start/End: Complemental strand, 31166038 - 31165773
Alignment:
Q  18 ttttaagttacatgattataacaagttagtcttaaggttttttagttatgcctcttcnnnnnnnnnn-ttacaaaatggtcctttaagtcataaaatatt 116  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||  |||||||           |||||||||| |||||||||||||||||||||    
T  31166038 ttttaagttacatgattataataagttagtcttaagtttttttagttacacctcttcaaaaaaaaaaattacaaaatgatcctttaagtcataaaatatt 31165939  T
Q  117 tgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaattaaa 216  Q
    |||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31165938 tgcaccattatcttaatttcatcaaacaaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaactaaa 31165839  T
Q  217 gcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31165838 gctcataggtgtgttattcgatcttgattcaaaataaaattaaccgattacttgatttataatatt 31165773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 15183610 - 15183807
Alignment:
Q  85 ttacaaaatggtccttt-aagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagtt 183  Q
    ||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| ||| ||||||||||||||    
T  15183610 ttacaaattggtccttttaagtcataaaatatttacatcattatcttaatttcatcaaacttaatcaaaaagtgtttatgtagatttttaatgttaagtt 15183709  T
Q  184 ggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatat 281  Q
    ||||| || ||||||||||||||||||| || | ||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||    
T  15183710 ggtttatctaaattcattgctctcaaaactagaacttataggtgtgttattcggtcttgattcaaaacaaaattgaccgattacatgatttataatat 15183807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 93 - 282
Target Start/End: Original strand, 39984743 - 39984932
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| |||||||||||||||||||||| ||||||| ||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |||    
T  39984743 tggtcttttaagtcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaaatgtttatgtggatgtttaatgttaagttggtttatcc 39984842  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||||||||||| ||||||| ||||||| | || |||| |||||| |||| ||  ||||||||||| ||||||||||||||||||||||||    
T  39984843 aaattcattgccctcaaaactaaagctcaaagatgtgctattcggtctttatgaaaaacaaaattgaccgattacttgatttataatatt 39984932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 85 - 281
Target Start/End: Original strand, 31064938 - 31065139
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| || ||||||||||| |||||||||||||  |||||| ||||||||||||| | |||||||||||||||||||||||||||||||||| |||     
T  31064938 ttacaaattgatcctttaagtcgtaaaatatttgcacaattatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttatgttt 31065037  T
Q  185 gtttgtccaaattc-----attgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataat 279  Q
    | ||||||||||||     ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||    
T  31065038 ggttgtccaaattcattatattgctctcaaaactagagctcataggtgtgttattcgatcttgattcaaaacaaaattgatctattacttgatttataat 31065137  T
Q  280 at 281  Q
    ||    
T  31065138 at 31065139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 282
Target Start/End: Original strand, 35306997 - 35307186
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||| | ||||| || |||||||||||||||||||||| ||||||||||||| |    
T  35306997 tggtcatttatgtcataaaatatttgcatcattatcctaatttcatcaaactcaatcacaatgtgtttatgtggatgtttaatgataagttggtttgttc 35307096  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||||||||||||||||||| ||| |||  ||||||| ||||||| |||||||||||||||||||| ||| ||||  | ||||||||||||    
T  35307097 aaattcattgctctcaaaactaaggctcgtaggtgtattattcggtcttgattcaaaacaaaattgaccaattaacttatttataatatt 35307186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 85 - 282
Target Start/End: Complemental strand, 14579373 - 14579178
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||| | ||||||| ||||||||||| ||||||||||||||| |||    
T  14579373 ttacaaattggtcttttaagtcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaagagtgtttatgtagatgtttaatgttaaattg 14579274  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    |||| |||||||||||||||||||||  || |||| |||||  ||||||||  ||||||||  ||| |||||| ||||||||||||||||||||||||    
T  14579273 gtttctccaaattcattgctctcaaacctagagctcataggaatgttattccgtcttgatt--aaaaaaaattgaccgattacttgatttataatatt 14579178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 98 - 282
Target Start/End: Complemental strand, 27458574 - 27458397
Alignment:
Q  98 ctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 197  Q
    |||||| |||||||||||| ||| ||||||| |||||||||       |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27458574 ctttaaatcataaaatattagcaccattatcctaatttcat-------aatcaaaaagtgtttatgtggatgcttaatgttaagttggtttgtccaaatt 27458482  T
Q  198 cattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||||||||| |||| || |||| ||||||||||||| |  |||||||||||||||||||| || |||||||||||||||||||||    
T  27458481 cattgctcttaaaactagagctcataggtgtgttatccagtcttgattcaaaacaaaattgactgattacttgatttataatatt 27458397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 11581674 - 11581532
Alignment:
Q  96 tcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaa--tgttaagttggtttgtcca 193  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||| ||||  |||||||||||||||||||    
T  11581674 tcctttaagtcataaaatatttgcatcattatcctaatttcatcaaacttaatcaaaaagtatttatgtggatgcttaatgtgttaagttggtttgtcca 11581575  T
Q  194 aattcattgctctcaaaattaaagcttataggtgtgttattcg 236  Q
    |||||||||||||||||| || |||| ||| ||||||||||||    
T  11581574 aattcattgctctcaaaactatagctcatatgtgtgttattcg 11581532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 101 - 285
Target Start/End: Complemental strand, 26801540 - 26801356
Alignment:
Q  101 taagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcat 200  Q
    |||||||||||||||||||||||||||| || ||||||||| || | | ||||| ||||||| || ||  |||||||||||||||| | ||||||| ||     
T  26801540 taagtcataaaatatttgcatcattatcctattttcatcaagtttagttaaaaaatgtttatatgaataattaatgttaagttggtatatccaaatccac 26801441  T
Q  201 tgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatattctt 285  Q
      ||||||||||||| | |||||||||| |||||||||||| |||  |||||||||| | |||||| ||||||||||||||||||    
T  26801440 aactctcaaaattaaggtttataggtgttttattcgatctttattttaaacaaaattgatcgattatttgatttataatattctt 26801356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 87 - 204
Target Start/End: Complemental strand, 6568179 - 6568062
Alignment:
Q  87 acaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 186  Q
    ||||| |||| |||||||||||||||||||| || || ||   || |||||||||| | ||| ||||| ||||||||| ||||||||||||||||||| |    
T  6568179 acaaattggtactttaagtcataaaatattttcaacaatactctattttcatcaaactcaattaaaaattgtttatgtagatgtttaatgttaagttgat 6568080  T
Q  187 ttgtccaaattcattgct 204  Q
      ||||||||||||||||    
T  6568079 gggtccaaattcattgct 6568062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 160 - 282
Target Start/End: Original strand, 2765459 - 2765580
Alignment:
Q  160 tatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaa 259  Q
    ||||||||||||| ||||||| || ||  |||||||||||  |||||||||| ||| | |||||| ||| ||||||| |||||||| ||||||||| | |    
T  2765459 tatgtggatgtttgatgttaactttgtacgtccaaattcaccgctctcaaaactaaggtttatagatgt-ttattcggtcttgatttaaaacaaaagtga 2765557  T
Q  260 ccgattacttgatttataatatt 282  Q
      |||||||||||||||||||||    
T  2765558 ttgattacttgatttataatatt 2765580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 15939455 - 15939330
Alignment:
Q  85 ttacaaaatggtccttt-aagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagtt 183  Q
    ||||||| ||||||||| || ||||||||||| |||| ||||||| || ||||||||||   | | |||||||||  ||||||| ||||||| |||||||    
T  15939455 ttacaaattggtccttttaaatcataaaatatctgcaccattatcatattttcatcaaacccagttaaaaagtgtgcatgtggacgtttaatcttaagtt 15939356  T
Q  184 ggtttgtccaaattcattgctctcaa 209  Q
    ||| |||||||| |||| ||||||||    
T  15939355 ggtatgtccaaactcatcgctctcaa 15939330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 210
Target Start/End: Complemental strand, 20710860 - 20710743
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| ||||||||||||||||||| || ||||||| |  |||||||||| | ||| ||||| | ||||||| | ||| ||||| |||||||||| ||||    
T  20710860 tggtcttttaagtcataaaatattttcaccattatcctcttttcatcaaactcaattaaaaaatatttatgtagctgtctaatgctaagttggttggtcc 20710761  T
Q  193 aaattcattgctctcaaa 210  Q
    ||||||| || |||||||    
T  20710760 aaattcactgttctcaaa 20710743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 15947819 - 15947709
Alignment:
Q  85 ttacaaaatggtccttt-aagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagtt 183  Q
    ||||||| ||||||||| |||||||||||||| |||| ||||||| || ||||||||||   | | |||||||||  |||||||  |||||| |||||||    
T  15947819 ttacaaattggtccttttaagtcataaaatatctgcaccattatcatattttcatcaaacccagttaaaaagtgtgcatgtggacatttaatcttaagtt 15947720  T
Q  184 ggtttgtccaa 194  Q
    ||  |||||||    
T  15947719 ggcatgtccaa 15947709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 194
Target Start/End: Complemental strand, 28292606 - 28292496
Alignment:
Q  85 ttacaaaatggtccttt-aagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagtt 183  Q
    ||||||| ||||||||| |||||||||||||| |||| ||||||| || ||||||||||   | | |||||||||  |||||||  |||||| |||||||    
T  28292606 ttacaaattggtccttttaagtcataaaatatctgcaccattatcatattttcatcaaacccagttaaaaagtgtgcatgtggacatttaatcttaagtt 28292507  T
Q  184 ggtttgtccaa 194  Q
    ||  |||||||    
T  28292506 ggcatgtccaa 28292496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 39984689 - 39984735
Alignment:
Q  19 tttaagttacatgattataacaagttagtc--ttaaggttttttagt 63  Q
    ||||||||||||||||||||||||||||||  ||||| |||||||||    
T  39984689 tttaagttacatgattataacaagttagtcctttaagtttttttagt 39984735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 42241865 - 42241924
Alignment:
Q  124 ttatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagtt 183  Q
    |||||||| ||| |||||| | | | |||||||||||||||||| |||||||||||||||    
T  42241865 ttatcttatttttatcaaacttagttaaaaagtgtttatgtggacgtttaatgttaagtt 42241924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 15183565 - 15183594
Alignment:
Q  19 tttaagttacatgattataacaagttagtc 48  Q
    ||||||||||||||||||||||||||||||    
T  15183565 tttaagttacatgattataacaagttagtc 15183594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 46798161 - 46798246
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||||||||| | || | ||||||  |||| ||||||||||   | | ||||||||||||||| |||||||||| ||||||||    
T  46798161 tttaagtcataaattcttggaatcattgccttattttcatcaaacacagttaaaaagtgtttatgtagatgtttaatattaagttg 46798246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 11581729 - 11581701
Alignment:
Q  22 aagttacatgattataacaagttagtctt 50  Q
    |||||||||||||||||||||||||||||    
T  11581729 aagttacatgattataacaagttagtctt 11581701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 85 - 282
Target Start/End: Complemental strand, 11175671 - 11175474
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| ||||| |||||||| ||||||||||||| ||||||| |||||| |||||| | |||||||||||||||||||||||||||||||||||||||    
T  11175671 ttacaaattggtcatttaagtcgtaaaatatttgcaccattatcctaattttatcaaacttaatcaaaaagtgtttatgtggatgtttaatgttaagttg 11175572  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    |||||||||||||| |||||||||||| || |||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||    
T  11175571 gtttgtccaaattctttgctctcaaaactagagctcataggtgtgttattcggtcttgattcaaaataaaattgaccgattacttgatttataatatt 11175474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 95 - 282
Target Start/End: Original strand, 15175058 - 15175242
Alignment:
Q  95 gtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaa 194  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||| | ||||||| | |||||||||||||||||||||||||||||||||||| ||    
T  15175058 gtcctttaagtcataaaatatttgcaccattattctaatttcatcaaactcaatcaaacaatgtttatgtggatgtttaatgttaagttggtttgtctaa 15175157  T
Q  195 attcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||   |||||||| ||| || |||| |||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  15175158 at---ttgctctcgaaactagagctcataggtgtgttattcggtcttgattcaaaacaaaattgatcgattacttgatttataatatt 15175242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 85 - 282
Target Start/End: Complemental strand, 35171118 - 35170921
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| ||||| ||||||||||||||||| |||| ||||||| ||||||||||||| | | ||||||||||||| | | ||||||||||| |||||||    
T  35171118 ttacaaattggtcatttaagtcataaaatatatgcaccattatcctaatttcatcaaactcagtcaaaaagtgtttgtatagatgtttaatgctaagttg 35171019  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
     |||||||||||||| | |||| |||||||  ||| |||||||||||||||| ||||| ||||||||||||||  |||||||||| ||||||||||||    
T  35171018 atttgtccaaattcacttctcttaaaattagggctcataggtgtgttattcggtcttggttcaaaacaaaattggccgattacttaatttataatatt 35170921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 93 - 282
Target Start/End: Original strand, 31447015 - 31447204
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||||||||||||||||||||||||||  ||||||||||||| | |||| |   ||||||||||||| ||||| ||||||||||||||||| |||||||    
T  31447015 tggtcctttaagtcataaaatatttgcactattatcttaatttaaccaaactccgtcaaaaagtgtttgtgtgggtgtttaatgttaagttgatttgtcc 31447114  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    |||||||  |||||||||| ||  ||  |||| ||||||||||| |||| ||||||||||||||| |  ||||||||||| |||||||||    
T  31447115 aaattcaccgctctcaaaactagggcacatagttgtgttattcggtcttcattcaaaacaaaattgattgattacttgatctataatatt 31447204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 266
Target Start/End: Complemental strand, 1824413 - 1824241
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| ||||||||||||||||||||||  |||||| ||||||||||||| |   |||||| ||||| ||||||||||||||||||||||| |||||| |    
T  1824413 tggtcatttaagtcataaaatatttgcactattatcctaatttcatcaaactcggtcaaaaggtgtt-atgtggatgtttaatgttaagtttgtttgttc 1824315  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgatta 266  Q
    |||||||||||||| |||| || |||| ||| ||||| |||||| || ||||||||||||||||| ||||||||    
T  1824314 aaattcattgctctaaaaactagagctcatatgtgtgctattcggtcctgattcaaaacaaaattgaccgatta 1824241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 266
Target Start/End: Complemental strand, 1858858 - 1858686
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| ||||||||||||||||||||||  |||||| ||||||||||||| |   |||||| ||||| ||||||||||||||||||||||| |||||| |    
T  1858858 tggtcatttaagtcataaaatatttgcactattatcctaatttcatcaaactcggtcaaaaggtgtt-atgtggatgtttaatgttaagtttgtttgttc 1858760  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgatta 266  Q
    |||||||||||||| |||| || |||| ||| ||||| |||||| || ||||||||||||||||| ||||||||    
T  1858759 aaattcattgctctaaaaactagagctcatatgtgtgctattcggtcctgattcaaaacaaaattgaccgatta 1858686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 9555297 - 9555212
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    |||||||||||||||||||||| || |||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||    
T  9555297 tttaagtcataaaatatttgcaccagtatcctaatttcatcaaactcaatcaaaaagtgtttatgtggatgtttaatgttaagttg 9555212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 85 - 277
Target Start/End: Complemental strand, 10840101 - 10839910
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| | |||||||||   ||||| ||| |||| |||||||||| |||||||||| |   | |||| ||||||||||||| |||| |||||||||||    
T  10840101 ttacaaattagtcctttaaaatataaagtatatgcaccattatcttattttcatcaaactcggttaaaa-gtgtttatgtggacgttttatgttaagttg 10840003  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttata 277  Q
     | |||||||||||| ||| ||||||| || |  |||||||||| ||||||  ||||||||  |||||||||| |  ||||||||||||||||    
T  10840002 atatgtccaaattcactgcactcaaaactagaatttataggtgtattattcactcttgatttgaaacaaaattgaatgattacttgatttata 10839910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 176 - 282
Target Start/End: Original strand, 43120648 - 43120754
Alignment:
Q  176 gttaagttggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgattta 275  Q
    ||||| ||||||||| |||||| |||| |||||||| || |||||||| |||||||||||  |||| |||||||| |||||| | |||||||||||||||    
T  43120648 gttaaattggtttgttcaaatttattgttctcaaaactagagcttatatgtgtgttattcagtctttattcaaaataaaattgatcgattacttgattta 43120747  T
Q  276 taatatt 282  Q
    |||||||    
T  43120748 taatatt 43120754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 4606076 - 4606180
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    |||| ||||||||||||||||| |||||  ||||||||| ||||| |||| | ||| ||||| || ||||||   ||||||||||||||||||| |||||    
T  4606076 tggttctttaagtcataaaatacttgcacaattatcttattttcaccaaactcaattaaaaaatggttatgt---tgtttaatgttaagttggtatgtcc 4606172  T
Q  193 aaattcat 200  Q
    ||||||||    
T  4606173 aaattcat 4606180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 16816293 - 16816200
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 186  Q
    ||||||||||||||||||||||| | |||||||||  ||||||||||||| |  || ||||| | ||||||||||  |||||||||||||||||    
T  16816293 tggtcctttaagtcataaaatatctacatcattattctaatttcatcaaactcgattaaaaaatatttatgtggacatttaatgttaagttggt 16816200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 245
Target Start/End: Complemental strand, 45537953 - 45537807
Alignment:
Q  98 ctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaatt 197  Q
    |||||||||||||||| | ||||  |||||| || |||||||||| |   | ||||| | ||||||||||| ||||||||||| |||||  |||||||||    
T  45537953 ctttaagtcataaaatctctgcactattatcatattttcatcaaactcggttaaaaaatatttatgtggat-tttaatgttaaattggtaggtccaaatt 45537855  T
Q  198 cattgctctcaaaattaaagcttataggtgtgttattcgatcttgatt 245  Q
    ||| |||||||||| ||| | | |||||||| ||||||  ||||||||    
T  45537854 catcgctctcaaaactaaggttcataggtgtattattcattcttgatt 45537807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 26601032 - 26600990
Alignment:
Q  240 ttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    |||||||||||||||||| ||||||||||||||||||||||||    
T  26601032 ttgattcaaaacaaaattgaccgattacttgatttataatatt 26600990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 26601121 - 26601066
Alignment:
Q  105 tcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgttt 160  Q
    ||||| |||||||||| |||||||||||||| |||||| | |||||||||||||||    
T  26601121 tcatacaatatttgcaccattatcttaattttatcaaactcaatcaaaaagtgttt 26601066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 280
Target Start/End: Original strand, 26916071 - 26916252
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 198  Q
    ||||| |||||||||||   ||| |||||  || |||||||||| |  || ||||||||||||| || | |||||||  ||| ||  | ||| |||||||    
T  26916071 tttaaatcataaaatatcctcattattattctattttcatcaaactcgattaaaaagtgtttatttgaacgtttaatactaaattcatatgttcaaattc 26916170  T
Q  199 attgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataata 280  Q
    || |||||||||| || || | ||| ||||| |||||  |||||||| ||| ||||||| | |  |||||||||||||||||    
T  26916171 atcgctctcaaaactatagttcatatgtgtgatattcagtcttgatttaaatcaaaattgatcatttacttgatttataata 26916252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 40112892 - 40112831
Alignment:
Q  117 tgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgtt 178  Q
    |||| |||||||||| |||||||||| | ||| ||||||||||||| || ||||||||||||    
T  40112892 tgcaccattatcttattttcatcaaactcaattaaaaagtgtttatatgaatgtttaatgtt 40112831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 35171164 - 35171122
Alignment:
Q  18 ttttaagttacatgattataacaagttagtcttaaggtttttt 60  Q
    |||||||||| |||||||||||||||||||||| | |||||||    
T  35171164 ttttaagttagatgattataacaagttagtctttaagtttttt 35171122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 43915729 - 43915639
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagtt 183  Q
    |||| |||||||||||||||||| | || ||||||  || |||||||||||||  | ||| ||||| |||||| | | |||||||||||||    
T  43915729 tggttctttaagtcataaaatatctacaccattattctattttcatcaaattatgttaaatagtgtgtatgtgtacgattaatgttaagtt 43915639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 9555358 - 9555310
Alignment:
Q  19 tttaagttacatgattataacaagttagtc--ttaaggttttttagtta 65  Q
    ||||||||||||||||||||||||||| ||  ||||| |||||||||||    
T  9555358 tttaagttacatgattataacaagttactcttttaagtttttttagtta 9555310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 4e-72; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 85 - 282
Target Start/End: Complemental strand, 2391684 - 2391487
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| || ||||||||||||||||||||||||| ||||| | ||||||||||||| | ||||||||||| ||||||||||| |||||||||||||||    
T  2391684 ttacaaattgatcctttaagtcataaaatatttgcaccattaccctaatttcatcaaactcaatcaaaaagtatttatgtggatatttaatgttaagttg 2391585  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||||||||||||||||||||||||||| || |||||||| |||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  2391584 gtttgtccaaattcattgctctcaaaactagagcttataagtgtgttattcggtcttgattcaaaacaaaattgatcgattacttgatttataatatt 2391487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 96 - 282
Target Start/End: Complemental strand, 11785926 - 11785742
Alignment:
Q  96 tcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaa 195  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11785926 tcctttaagtcataaaatatttgcaccattatcctaatttcatcacactcaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaa 11785827  T
Q  196 ttcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    |||||||||||||||| |||| || ||||   ||||||||  |||||||||||||||||||| || ||||||||  |||||||||||    
T  11785826 ttcattgctctcaaaactaaaactcatagacatgttattcagtcttgattcaaaacaaaattgacagattactt--tttataatatt 11785742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 282
Target Start/End: Complemental strand, 11752130 - 11751943
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| |||| ||||||||||||||||| ||||||| ||||||||||||| | |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  11752130 tggtcatttatgtcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaatgtgtt-atgtggatgtttaatgttaagttggtttgtcc 11752032  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||||| |||||| |||||| ||| |||  ||||||||||||||| |||||||||||||||||||| ||| |||||||||||| |||||||    
T  11752031 aaatttattgctatcaaaactaaggctcgtaggtgtgttattcg-tcttgattcaaaacaaaattgaccaattacttgatttgtaatatt 11751943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 86 - 279
Target Start/End: Original strand, 10479504 - 10479697
Alignment:
Q  86 tacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaag-tgtttatgtggatgtttaatgttaagttg 184  Q
    |||||| ||||| ||||| | |||||||||||| | | ||||| ||||||||||||| | | |||||||  ||||| |||||||||||||||||||||||    
T  10479504 tacaaattggtcttttaaataataaaatatttgtacctttatcctaatttcatcaaactcagtcaaaaacatgtttgtgtggatgtttaatgttaagttg 10479603  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataat 279  Q
     || ||||||||||| | |||| |||| ||  ||| | |||||||||||||| |||||||||||||||||||| | |||||||||||||||||||    
T  10479604 att-gtccaaattcactactcttaaaactatggctcaaaggtgtgttattcggtcttgattcaaaacaaaattgatcgattacttgatttataat 10479697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 211
Target Start/End: Complemental strand, 10629134 - 10629023
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 198  Q
    ||||||||||||| |||||||||||||||  || ||||| |||| |  || |||||  |||||||| |||||| ||| |||||||| | |||||||||||    
T  10629134 tttaagtcataaa-tatttgcatcattattctattttcaccaaactcgattaaaaaaagtttatgttgatgttcaatattaagttgatatgtccaaattc 10629036  T
Q  199 attgctctcaaaa 211  Q
    |||| ||||||||    
T  10629035 attgttctcaaaa 10629023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 95 - 282
Target Start/End: Original strand, 8795545 - 8795731
Alignment:
Q  95 gtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaa 194  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8795545 gtcctttaagtcataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtt-atgtggatgtttaatgttaagttggtttgtccaa 8795643  T
Q  195 attcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||||||||||||||||| || |||| ||| |||||||||||| |||||||||||||||||||| | | ||||||||||||||||||||    
T  8795644 attcattgctctcaaaactagagctcataagtgtgttattcggtcttgattcaaaacaaaattgatcaattacttgatttataatatt 8795731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 93 - 282
Target Start/End: Original strand, 16194082 - 16194271
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||| ||||||||||||||||    
T  16194082 tggtcctttaaatcataaaatatttgcatcattatcctaatttcatcaaattcaatcaaaaaatgtttttgtggatgtttaatattaagttggtttgtcc 16194181  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    |||||||| ||||| |||| || |||| ||||||||||||||   |||||||||||||||||||| | ||||||||||||||||||||||    
T  16194182 aaattcatagctcttaaaactagagctcataggtgtgttatttagtcttgattcaaaacaaaattgatcgattacttgatttataatatt 16194271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 93 - 282
Target Start/End: Original strand, 18680622 - 18680810
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| ||||||| |||||||||||||| ||||||| ||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||    
T  18680622 tggtcatttaagtaataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttgtatggatgtttaatgttaagttggtttgtcc 18680721  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||  ||||||||| |||||||||| | ||||||||||||||||||||||    
T  18680722 aaattaattgctctcaaaactaaagctcataggtgtgttattctgtcttgattc-aaacaaaattgatcgattacttgatttataatatt 18680810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 85 - 250
Target Start/End: Complemental strand, 42340053 - 42339888
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| ||||| |||| ||||||||||||||||| ||||||| ||||||| ||||| | || |||||| ||||||||||||||||||||||||||||     
T  42340053 ttacaaattggtcatttatgtcataaaatatttgcaccattatcctaatttcgtcaaactcaaacaaaaaatgtttatgtggatgtttaatgttaagttc 42339954  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaa 250  Q
    || |||||||||||||||||||||||| || || | ||||||||||||||||||||| ||| ||||    
T  42339953 gtctgtccaaattcattgctctcaaaactagagttcataggtgtgttattcgatctttattaaaaa 42339888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 85 - 281
Target Start/End: Complemental strand, 29306506 - 29306320
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| ||||| ||||||||||||||||||| || ||||||| ||||||||||||| | |||||||||| |||||| |||||||||||||||||||||    
T  29306506 ttacaaattggtc-tttaagtcataaaatatttacaccattatcctaatttcatcaaacttaatcaaaaagcgtttatatggatgtttaatgttaagttg 29306408  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatat 281  Q
    ||||||||||||||||| |         || || |  |||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||    
T  29306407 gtttgtccaaattcatttc---------tagaggtcgtaggtgtgttattcgatcttaattcaaaacaaaattgatcgattacttgatttataatat 29306320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 93 - 279
Target Start/End: Complemental strand, 43370093 - 43369911
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaag-tgtttatgtggatgtttaatgttaagttggtttgtc 191  Q
    ||||| |||||||| ||||||||||||| |||| |  ||||||||||||| ||| |||||||  | ||| ||| |||||||||||   ||||| ||||||    
T  43370093 tggtcatttaagtcgtaaaatatttgcaccatttttctaatttcatcaaactaagtcaaaaaaatatttgtgtagatgtttaatg---agttgatttgtc 43369997  T
Q  192 caaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataat 279  Q
    |||||||| | ||||||||| ||| | | |||||||||||||||| ||||||| |||||||||||| || ||||||  ||||||||||    
T  43369996 caaattcactactctcaaaactaatgttcataggtgtgttattcggtcttgatacaaaacaaaattgactgattac--gatttataat 43369911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 33282996 - 33282882
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| |||||||||||||||||||| |||  |||||||||| || ||| |||||| | | | |||||||||||||||||| ||||||||||||||||    
T  33282996 ttacaaattggtcctttaagtcataaaacattcacatcattatcatattttaatcaaactcagttaaaaagtgtttatgtggacgtttaatgttaagttg 33282897  T
Q  185 gtttgtccaaattca 199  Q
    ||  ||| |||||||    
T  33282896 gtaggtctaaattca 33282882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 34629913 - 34629968
Alignment:
Q  149 caaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgct 204  Q
    |||||||||||||||||||||||||||| ||||||| ||||| |||| ||||||||    
T  34629913 caaaaagtgtttatgtggatgtttaatggtaagttgatttgtacaaactcattgct 34629968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 47731292 - 47731178
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatt-tcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagtt 183  Q
    ||||||| || || |||||||||||||| || |||||||||||  || || |||||||| | ||| ||||||||||||| |||| ||||||||||||||     
T  47731292 ttacaaattgatcatttaagtcataaaa-atctgcatcattattatatttctcatcaaacttaattaaaaagtgtttatatggacgtttaatgttaagtc 47731194  T
Q  184 ggtttgtccaaattca 199  Q
    ||| | | ||||||||    
T  47731193 ggtattttcaaattca 47731178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 36261112 - 36260998
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| || || ||||||| | ||||||| |||| ||| ||| || |||||||||| |   | ||||||||||||| ||||  ||||||||||||| |    
T  36261112 ttacaaattgatcatttaagttagaaaatatatgcaccatgatcctattttcatcaaactctgttaaaaagtgtttatttggacatttaatgttaagtag 36261013  T
Q  185 gtttgtccaaattca 199  Q
    || ||||||||||||    
T  36261012 gtatgtccaaattca 36260998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 39028862 - 39028813
Alignment:
Q  150 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 199  Q
    ||||||||||||||| ||||||||||||||||||  | ||||||||||||    
T  39028862 aaaaagtgtttatgtagatgtttaatgttaagtttatatgtccaaattca 39028813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 199
Target Start/End: Complemental strand, 28763244 - 28763177
Alignment:
Q  132 atttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 199  Q
    ||||||||||||| | | ||||| ||||||| |||| |||||||||||||||||| ||  ||||||||    
T  28763244 atttcatcaaatttagttaaaaaatgtttatttggacgtttaatgttaagttggtatggtcaaattca 28763177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 7579594 - 7579541
Alignment:
Q  133 tttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 186  Q
    |||||||||| | ||| |||| |||||||||| || ||||||||||||||||||    
T  7579594 tttcatcaaactcaattaaaaggtgtttatgttgacgtttaatgttaagttggt 7579541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 33282521 - 33282569
Alignment:
Q  19 tttaagttacatgattataacaagttagtc--ttaaggttttttagtta 65  Q
    ||||||||||||||||||||||||||| ||  ||||| |||||||||||    
T  33282521 tttaagttacatgattataacaagttaatcgtttaagcttttttagtta 33282569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 199
Target Start/End: Original strand, 30299579 - 30299678
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 198  Q
    ||||||| ||||||||||||||||||| || || |||||| ||| | | | ||||| | ||||||| || ||||||||||| |||| | | |||||||||    
T  30299579 tttaagttataaaatatttgcatcattgtcctattttcataaaactcatttaaaaaatatttatgt-gacgtttaatgttacgttgttatttccaaattc 30299677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 93 - 282
Target Start/End: Original strand, 5750584 - 5750772
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| ||||||| |||||||||||||| ||||||| ||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||    
T  5750584 tggtcatttaagtaataaaatatttgcaccattatcctaatttcatcaaactcaatcaaaaagtgtttgtatggatgtttaatgttaagttggtttgtcc 5750683  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||||| ||||||||||||| ||||||| |||||||||||||||  ||||||||| |||||||||| | ||||||||||||||||||||||    
T  5750684 aaattaattgctctcaaaactaaagctcataggtgtgttattctgtcttgattc-aaacaaaattgatcgattacttgatttataatatt 5750772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 99 - 282
Target Start/End: Complemental strand, 867812 - 867625
Alignment:
Q  99 tttaagtcataaaatatttgcatcatta----tcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaa 194  Q
    ||||||||||||||||||||||||||||    || ||||||||||||| | |||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  867812 tttaagtcataaaatatttgcatcattaattgtcctaatttcatcaaacttaatcaaaaagtgtttacgtggatgtttactgttaagttagtttgtccaa 867713  T
Q  195 attcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    |||||||  | |||||| || |||| |||   |||||||||| |||||||||||||||||| | |||||||| |||||||||||||||    
T  867712 attcatttatatcaaaagtagagctcataatagtgttattcggtcttgattcaaaacaaaaatgaccgattatttgatttataatatt 867625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 93 - 279
Target Start/End: Original strand, 56094123 - 56094311
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaag--tgtttatgtggatgtttaatgttaagttggtttgt 190  Q
    ||||| ||||||| |||||||| ||||| ||||||| ||||||||||||| ||| |||||||   ||||| ||||||||||||||||||||||| |||||    
T  56094123 tggtcatttaagttataaaataattgcaccattatcctaatttcatcaaactaagtcaaaaaaaatgtttgtgtggatgtttaatgttaagttgatttgt 56094222  T
Q  191 ccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataat 279  Q
    ||||||||| ||||||||||| ||  ||| |||| ||||||||||| |||| |||||||| |||||| ||| |||||||||||||||||    
T  56094223 ccaaattcactgctctcaaaactagtgctcatagatgtgttattcggtctttattcaaaataaaattgacctattacttgatttataat 56094311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 282
Target Start/End: Complemental strand, 35293108 - 35292995
Alignment:
Q  169 gtttaatgttaagttggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattact 268  Q
    |||||||||||||||||| |||| |||||||| |||||||||||||  | | |||  ||| ||||||  ||||||||  |||||||||| | ||||||||    
T  35293108 gtttaatgttaagttggtatgtctaaattcatcgctctcaaaattagggttcataaatgtattattcagtcttgatttgaaacaaaattgatcgattact 35293009  T
Q  269 tgatttataatatt 282  Q
    ||||||||||||||    
T  35293008 tgatttataatatt 35292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 281
Target Start/End: Complemental strand, 24195191 - 24195003
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| |||||||||||||||||  ||| ||||||  || |||| ||||| | | | |||||||||||||||| | |||| ||||||||||||| |||||    
T  24195191 tggtcatttaagtcataaaatatcggcaccattattatattttcttcaaactcagttaaaaagtgtttatgtgaacgtttgatgttaagttggtatgtcc 24195092  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatat 281  Q
    || |||||  ||||||||||||  | | | | |||||||||||  |||||| |  |||||||||| |   ||||||| |||||||||||    
T  24195091 aatttcatcactctcaaaattagggttcaaaagtgtgttattcagtcttgacttgaaacaaaattgattaattacttaatttataatat 24195003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 186 - 278
Target Start/End: Complemental strand, 42679442 - 42679350
Alignment:
Q  186 tttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataa 278  Q
    |||||||||||||| |||||| |||| ||  ||| | ||||||||||| || | |||||||||||||||||| ||||||||||||||||||||    
T  42679442 tttgtccaaattcactgctcttaaaactagtgctcaaaggtgtgttatacggttttgattcaaaacaaaattgaccgattacttgatttataa 42679350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 85 - 180
Target Start/End: Original strand, 48546755 - 48546850
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaa 180  Q
    ||||||| || |||||||| |||||||||||||||| ||||||| || |||||||||| | | | |||||||||||||||||| |||| |||||||    
T  48546755 ttacaaattgatcctttaaatcataaaatatttgcaccattatcctattttcatcaaacttagttaaaaagtgtttatgtggacgtttgatgttaa 48546850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 23480707 - 23480646
Alignment:
Q  150 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaa 211  Q
    ||||||||||||||| |||||||||||||||||||||  || |||||||| |||||||||||    
T  23480707 aaaaagtgtttatgttgatgtttaatgttaagttggtgggttcaaattcactgctctcaaaa 23480646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 184
Target Start/End: Original strand, 48685615 - 48685706
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||||||| | ||||||||| | || |||||| ||| |||||||||||||||| |||||||| |||||| ||  |||| ||||||||||    
T  48685615 tggtcctttaaatgataaaatatctacaccattattttattttcatcaaattaaattaaaaagtgcttatgtagacatttattgttaagttg 48685706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 282
Target Start/End: Complemental strand, 51983621 - 51983474
Alignment:
Q  137 atcaaattaaatcaaaaagtgtttatgtggatgtttaat-gttaagttggtttgtccaaattcattgctctcaaaattaaagctt-ataggtgtgttatt 234  Q
    |||||| | ||| ||||| ||||||||| ||| |||||| ||||||||||| ||| |||||| | || |||||||||||  | || ||| |||| |||||    
T  51983621 atcaaactcaattaaaaaatgtttatgtagatatttaattgttaagttggtatgttcaaattaactgttctcaaaattaggggttcataagtgtattatt 51983522  T
Q  235 cgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    |||||||||||  | ||||| || | ||||||||| ||||||||||||    
T  51983521 cgatcttgatttgacacaaagttgatcgattacttaatttataatatt 51983474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 282
Target Start/End: Original strand, 18742940 - 18743073
Alignment:
Q  150 aaaaagtgtttatgtggatgtttaatgttaagtt-ggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaa 248  Q
    |||||||||||| ||||| ||||||||||| ||| ||  |||| || ||||| |||||| ||||||  | | ||| ||||||||||| |||||||||  |    
T  18742940 aaaaagtgtttacgtggacgtttaatgttatgtttggcatgtcaaagttcatcgctctcgaaattatggttcataagtgtgttattcaatcttgatttga 18743039  T
Q  249 aacaaaattaaccgattacttgatttataatatt 282  Q
    ||| ||||| | || ||||||||||| |||||||    
T  18743040 aactaaattgatcggttacttgatttgtaatatt 18743073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 186
Target Start/End: Complemental strand, 26003959 - 26003923
Alignment:
Q  150 aaaaagtgtttatgtggatgtttaatgttaagttggt 186  Q
    |||||||||||||||||| ||||||||||||||||||    
T  26003959 aaaaagtgtttatgtggaagtttaatgttaagttggt 26003923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 142
Target Start/End: Original strand, 24273919 - 24273962
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaa 142  Q
    ||||||||||||||||| |||||||||||| || ||||||||||    
T  24273919 tttaagtcataaaatatctgcatcattatcctattttcatcaaa 24273962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 2819068 - 2819027
Alignment:
Q  170 tttaatgttaagttggtttgtccaaattcattgctctcaaaa 211  Q
    ||||||| |||||||||| ||| |||||||||||||||||||    
T  2819068 tttaatgctaagttggttggtcgaaattcattgctctcaaaa 2819027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 183
Target Start/End: Original strand, 3161389 - 3161474
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaat-taaatcaaaaagtgtttatgtggatgtttaatgttaagtt 183  Q
    |||||||||||||||| |||||  |||||| || ||||||| ||  ||| | ||||| | |||||||||| |||||||||||||||    
T  3161389 tttaagtcataaaatacttgcacaattatcctattttcatctaacctaattaaaaaaatatttatgtggacgtttaatgttaagtt 3161474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 7556136 - 7556087
Alignment:
Q  150 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattca 199  Q
    |||| ||||||||||  |||||||||||||||||||| ||| ||||||||    
T  7556136 aaaatgtgtttatgtaaatgtttaatgttaagttggtatgttcaaattca 7556087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 211
Target Start/End: Original strand, 56361138 - 56361250
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 198  Q
    |||||||||||||||||||  || |||||| || ||| || ||| | ||| ||||||| ||||  | ||  |||||||||||||| || |||||| ||||    
T  56361138 tttaagtcataaaatattttaataattatcatatttttattaaactcaattaaaaagtatttacatagacatttaatgttaagttagtatgtccacattc 56361237  T
Q  199 attgctctcaaaa 211  Q
    ||  |||||||||    
T  56361238 atctctctcaaaa 56361250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 85 - 282
Target Start/End: Original strand, 5187741 - 5187938
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| ||||||||||| |||||||||||||||| ||||||  ||||||||||||| | |||||||||||||||||||| ||||||||||||||||||    
T  5187741 ttacaaattggtcctttaaatcataaaatatttgcaccattattctaatttcatcaaactcaatcaaaaagtgtttatgtgaatgtttaatgttaagttg 5187840  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||| |||||||||||||  | |||||| || |||| || ||||||||||||| |||||||||||||||||||| ||| ||||||| ||||||||||||    
T  5187841 gttggtccaaattcattattttcaaaactagagctcatgggtgtgttattcggtcttgattcaaaacaaaatttaccaattacttaatttataatatt 5187938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 85 - 279
Target Start/End: Original strand, 21436886 - 21437080
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| |||||||||||||||||||||| ||||| | ||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||    
T  21436886 ttacaaattggtcctttaagtcataaaataattgcaccgttatcctaatttcatcaaactaagtcaaaaagtgtttgtgtggatgtttaatgttaagttg 21436985  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataat 279  Q
     |||||||||||||| |||| |||||| ||  | | |||  ||||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  21436986 atttgtccaaattcactgctgtcaaaactagtgatcataaatgtgttattcgattttgattcaaaacaaaattgaccgattacttgatttataat 21437080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 85 - 282
Target Start/End: Original strand, 9298601 - 9298797
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| ||||| ||||||||||||||||||||||  |||||| ||||||||||||||| | ||||||||| ||||||||||||||||||||||||||     
T  9298601 ttacaaattggtc-tttaagtcataaaatatttgcactattatcctaatttcatcaaattcagtcaaaaagtatttatgtggatgtttaatgttaagttt 9298699  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    || |||||||||||||||||||  ||| || |||| ||||| |||||||||  |||||||||||||||||||| |||||||| |||||||||||||||    
T  9298700 gtctgtccaaattcattgctctataaactagagctcataggagtgttattcagtcttgattcaaaacaaaattgaccgattatttgatttataatatt 9298797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 85 - 282
Target Start/End: Original strand, 18704551 - 18704748
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| ||||| ||||||||||||||||||| || |||||||  |||||||||||| |   ||||||||||| | |||||||| ||||||||||||||    
T  18704551 ttacaaattggtcatttaagtcataaaatattttcaccattatcccaatttcatcaaactcggtcaaaaagtgtatgtgtggatgcttaatgttaagttg 18704650  T
Q  185 gtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
     ||||||| ||||||| |||||||||| ||  | | |||||||||||||| |||||||||||||||||||||| |||||||| || ||||||||||||    
T  18704651 atttgtcctaattcatcgctctcaaaactatggttcataggtgtgttatttgatcttgattcaaaacaaaattgaccgattatttaatttataatatt 18704748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 282
Target Start/End: Complemental strand, 10221838 - 10221654
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaat-ta---aatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaa 194  Q
    ||||||||||||||||||||||  |||||| |||||||||||||  ||   ||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  10221838 tttaagtcataaaatatttgcacgattatcctaatttcatcaaacatacataattaaaaggtgtttatgtggatgtttaatgttaagttggtttgtccaa 10221739  T
Q  195 attcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    ||||||||||||||||| || |||| ||| ||||||||||||    ||||||||||||||||| ||  |||| |||||||||||||||    
T  10221738 attcattgctctcaaaactatagctcatatgtgtgttattcg---gtgattcaaaacaaaattgactaattatttgatttataatatt 10221654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 199
Target Start/End: Original strand, 1130599 - 1130712
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||| ||||| ||||||||||||||||| |||||||||||| || ||| |||||| | | | |||||||||||||||||| ||||||||||| ||||    
T  1130599 ttacaaattggtcttttaagtcataaaatatctgcatcattatcctattttaatcaaactcagttaaaaagtgtttatgtgga-gtttaatgttaggttg 1130697  T
Q  185 gtttgtccaaattca 199  Q
    ||  ||| |||||||    
T  1130698 gtaggtctaaattca 1130712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 186
Target Start/End: Original strand, 931122 - 931209
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 186  Q
    ||||||||||||||||| |||||||||||| || |||||||||| | | | |||| ||||||||||||  ||||||||||||||||||    
T  931122 tttaagtcataaaatatatgcatcattatcatactttcatcaaacttagttaaaaggtgtttatgtggccgtttaatgttaagttggt 931209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 245
Target Start/End: Complemental strand, 37817896 - 37817735
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaa-ttaaatcaaaaagtgtttatgtggatgtttaatgttaagtt 183  Q
    ||||||| ||||| ||||||||| |||||||||||||  |||| ||| |||||||||| |||| | ||||| ||||||||| ||   |||||||||||||    
T  37817896 ttacaaattggtcatttaagtcagaaaatatttgcattgttattttattttcatcaaatttaattaaaaaaatgtttatgtagacacttaatgttaagtt 37817797  T
Q  184 ggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgatt 245  Q
      | ||||||||||||  |||||||||| ||  | | ||| |||| |||||| |||||||||    
T  37817796 aatatgtccaaattcaccgctctcaaaactatggttcataagtgtattattcaatcttgatt 37817735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 150 - 245
Target Start/End: Original strand, 9158622 - 9158717
Alignment:
Q  150 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgatt 245  Q
    ||||||||||||| |||| |||| ||||||||||||| |||||||| |||   ||||||||| ||  | |||||||||| |||||| |||||||||    
T  9158622 aaaaagtgtttatttggaagtttgatgttaagttggtatgtccaaactcaccactctcaaaactattgtttataggtgtattattcaatcttgatt 9158717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 282
Target Start/End: Complemental strand, 17200866 - 17200717
Alignment:
Q  133 tttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgtta 232  Q
    |||| ||||| | ||| ||||| |||||| || || ||| |||||||||||||| |   ||||||||| |||||||||| || |  | |||||||  ||     
T  17200866 tttcctcaaacttaattaaaaaatgtttacgtagacgttgaatgttaagttggtatacacaaattcatcgctctcaaaactagacttcataggtgcattg 17200767  T
Q  233 ttcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    |||  ||||||||| ||| |||||| | |||| |||||||||||||||||    
T  17200766 ttcactcttgattcgaaataaaattgatcgatcacttgatttataatatt 17200717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 186
Target Start/End: Original strand, 21508797 - 21508878
Alignment:
Q  105 tcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 186  Q
    |||||||| || ||||  |||||| || |||||||||||  | | ||||||||||||||||||  |||||||||||||||||    
T  21508797 tcataaaacatatgcactattatcctattttcatcaaatgcagtaaaaaagtgtttatgtggacatttaatgttaagttggt 21508878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 25318858 - 25318929
Alignment:
Q  100 ttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtt 171  Q
    |||||||||||||||| ||||  ||||||||| |||||||||||| | | ||| | | ||||||||||||||    
T  25318858 ttaagtcataaaatatatgcactattatcttattttcatcaaattcagttaaacaatatttatgtggatgtt 25318929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 83891 - 83834
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaa 142  Q
    |||||||| | || ||||||||||||||||| |||||  |||||||| ||||||||||    
T  83891 ttacaaaacgatcatttaagtcataaaatatatgcattgttatcttattttcatcaaa 83834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 35716390 - 35716502
Alignment:
Q  87 acaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggt 186  Q
    ||||| || ||||||||||| ||| |||||| || ||||| | |  |||| ||||| | | | |||||||| ||||||||| ||| |||| |||||||||    
T  35716390 acaaattgatcctttaagtcgtaacatattttcaccattaccctcttttcgtcaaactcagttaaaaagtgcttatgtggacgttgaatgctaagttggt 35716489  T
Q  187 ttgtccaaattca 199  Q
      |||||||||||    
T  35716490 gggtccaaattca 35716502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 228
Target Start/End: Original strand, 41437292 - 41437363
Alignment:
Q  156 tgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaattaaagcttataggtgt 228  Q
    ||||||||||||| |||||||||||||||| | || |||||||| || ||| |||||||  | ||||||||||    
T  41437292 tgtttatgtggatatttaatgttaagttgg-tagttcaaattcactgttcttaaaattatggtttataggtgt 41437363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 279
Target Start/End: Original strand, 43080850 - 43080906
Alignment:
Q  223 aggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataat 279  Q
    |||||||||||| | |||||||| ||||||||||| || | |||| |||||||||||    
T  43080850 aggtgtgttatttggtcttgatttaaaacaaaattcacagtttacatgatttataat 43080906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 93 - 279
Target Start/End: Original strand, 16600322 - 16600508
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| |||||||||||||||||||||| ||||||| |||||| |||||| ||| ||||||||||||||||||||||||||||||||||||  |||||||    
T  16600322 tggtcatttaagtcataaaatatttgcaccattatcctaatttaatcaaactaagtcaaaaagtgtttatgtggatgtttaatgttaagtttatttgtcc 16600421  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataat 279  Q
    || |||||||||||||||| ||  ||| |||||| ||||||||| ||||||||||||| |||||| ||||||||||||| |||||||    
T  16600422 aagttcattgctctcaaaactagtgctcataggtctgttattcgctcttgattcaaaataaaatttaccgattacttgaattataat 16600508  T

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Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 94 - 282
Target Start/End: Complemental strand, 33401813 - 33401632
Alignment:
Q  94 ggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcca 193  Q
    ||||||||||| |||||||||||||||  |||||| || |||||| |||||  |||||||||||||||||||||||||||||||||| ||||||||||||    
T  33401813 ggtcctttaagccataaaatatttgcactattatcctagtttcattaaattcgatcaaaaagtgtttatgtggatgtttaatgttaacttggtttgtcca 33401714  T
Q  194 aattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    |||| ||||||||||||| || || | ||| ||||||       |||||||||||||||||||| || |||||| ||||||||||||||    
T  33401713 aattaattgctctcaaaactagaggtcatatgtgtgt-------tcttgattcaaaacaaaattgacggattacgtgatttataatatt 33401632  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 90 - 282
Target Start/End: Complemental strand, 5474234 - 5474042
Alignment:
Q  90 aaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttg 189  Q
    |||||||| ||||| ||||||||||| |||||||| ||| || |||||||||| | | | |||||||||||||||| |  ||||||||||  ||||| ||    
T  5474234 aaatggtcttttaattcataaaatatatgcatcatcatcctattttcatcaaacttagttaaaaagtgtttatgtgcacatttaatgttagattggtatg 5474135  T
Q  190 tccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataatatt 282  Q
    | ||||| ||  ||||||||||  | || | ||| |||| |||||| |||||||||  |||||||||| |  | ||||| | |||||||||||    
T  5474134 ttcaaatccaccgctctcaaaaccagagttcatatgtgtattattcaatcttgatttgaaacaaaattgattgtttactagttttataatatt 5474042  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 932487 - 932587
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||||||||| |||||||||||||| |||||||||||  |||||||||| |  || ||||| |||||||||||  |||||||||||| || || |||||    
T  932487 tggtcctttaaatcataaaatatttgaatcattatcttgttttcatcaaactcgattaaaaattgtttatgtgggcgtttaatgttaaatttgtatgtcc 932586  T
Q  193 a 193  Q
    |    
T  932587 a 932587  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 279
Target Start/End: Complemental strand, 10099729 - 10099639
Alignment:
Q  189 gtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataat 279  Q
    |||||||||||| |||||||||||||| | | |||| ||| || |||| |||| |||||||||| | | || |||||||||||||||||||    
T  10099729 gtccaaattcatcgctctcaaaattaaggttcatagttgtatttttcggtctttattcaaaacatattcaatcgattacttgatttataat 10099639  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 22001436 - 22001364
Alignment:
Q  169 gtttaatgttaagttggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatctt 241  Q
    ||||| |||| ||||||| ||||||||||||  ||| |||||||||||| |||||| ||| |||||| |||||    
T  22001436 gtttattgttcagttggtatgtccaaattcacagctttcaaaattaaagtttatagatgttttattcaatctt 22001364  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 27499553 - 27499436
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| |||| |||||||||||||| || || ||||||| |||||||||| | ||| ||||| | ||||| | ||  ||||||||||||||| | ||||     
T  27499553 tggtcatttatgtcataaaatatttacaccactatcttattttcatcaaactcaattaaaaaatatttat-ttgaactttaatgttaagttgctatgtct 27499455  T
Q  193 aaattcattgctctcaaaa 211  Q
    ||||| ||  |||||||||    
T  27499454 aaattaatcactctcaaaa 27499436  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 278977 - 279013
Alignment:
Q  150 aaaaagtgtttatgtggatgtttaatgttaagttggt 186  Q
    |||||||||||||||||||||| | ||||||||||||    
T  278977 aaaaagtgtttatgtggatgttaattgttaagttggt 279013  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 5552412 - 5552472
Alignment:
Q  150 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaa 210  Q
    ||||||| |||||||||| ||||||||||||||| ||  || |||||||| | ||||||||    
T  5552412 aaaaagtatttatgtggacgtttaatgttaagttagtgagttcaaattcactactctcaaa 5552472  T

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Target: scaffold0001 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 93 - 272
Target Start/End: Complemental strand, 508406 - 508227
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| |||| |||||| |||||||||| ||||||| ||||||||||||| | |||||||| |||||||||||||||||||||||||||||| ||| |||    
T  508406 tggtcatttatgtcatagaatatttgcaccattatcctaatttcatcaaactcaatcaaaatgtgtttatgtggatgtttaatgttaagttgatttatcc 508307  T
Q  193 aaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgat 272  Q
    ||||||||||||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||   ||||||||||    
T  508306 aaattcattgctctcaaaattaaggcttgtgggtgtgttattcggtcttgattcaaaacaaaattaattaattacttgat 508227  T

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Target: chr7 (Bit Score: 104; Significance: 7e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 88 - 279
Target Start/End: Complemental strand, 34596242 - 34596051
Alignment:
Q  88 caaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtt 187  Q
    |||| ||||| ||||||||||||||||||||||  |||||| || ||||||| || ||| ||||||||||||| ||||||||||||||||||||||| ||    
T  34596242 caaattggtcatttaagtcataaaatatttgcactattatcctagtttcatcgaactaagtcaaaaagtgtttgtgtggatgtttaatgttaagttgatt 34596143  T
Q  188 tgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaattaaccgattacttgatttataat 279  Q
    |||||||||||| ||||||||||| ||  |    ||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||    
T  34596142 tgtccaaattcactgctctcaaaactagtgtccgtaggtgtgttattcgatcttgattcaaaataaaattgacggattacttgatttataat 34596051  T

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Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 99 - 257
Target Start/End: Complemental strand, 29408158 - 29408000
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 198  Q
    ||||||||||||||||||||||  |||||  ||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29408158 tttaagtcataaaatatttgcactattattctaatttcatcaaactcaatcaaaaagtgtttatatggatgtttaatgttaagttggtttgtccaaattc 29408059  T
Q  199 attgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaacaaaatt 257  Q
    |||| |||||||| || || | |||| ||| ||||||| |||||||||||| |||||||    
T  29408058 attgttctcaaaactagagttcatagatgtattattcggtcttgattcaaatcaaaatt 29408000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 85 - 250
Target Start/End: Original strand, 47084741 - 47084905
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatg-ttaagtt 183  Q
    ||||||| |||||||||||||||  ||||||||||| ||||||| |||||||| |||| | ||||||||||||||||||||||||||||||| |||||||    
T  47084741 ttacaaattggtcctttaagtca--aaatatttgcaccattatcctaatttcaacaaacttaatcaaaaagtgtttatgtggatgtttaatgtttaagtt 47084838  T
Q  184 ggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaaa 250  Q
    |||||||| |||||||||| | |||||  || || | |||||||||||||||| | |||||| ||||    
T  47084839 ggtttgtcaaaattcattgatgtcaaatctagagttcataggtgtgttattcggtattgattaaaaa 47084905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 85 - 188
Target Start/End: Original strand, 39983528 - 39983634
Alignment:
Q  85 ttacaaaatggtcctttaa-gtcataaaatattt--gcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaag 181  Q
    ||||||| ||||||||| | |||||||||||| |  ||| ||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  39983528 ttacaaattggtccttttatgtcataaaatatatatgcaccattatcctaatttcatcagattcaatcaaaaagtgtttatgtggatgtttaatgttaag 39983627  T
Q  182 ttggttt 188  Q
    |||||||    
T  39983628 ttggttt 39983634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 199
Target Start/End: Complemental strand, 32297455 - 32297350
Alignment:
Q  93 tggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtcc 192  Q
    ||||| |||||||||||||| || |||||||| ||| || ||| ||||||||  || ||||||||||||||||||  |||||| |||||||||| |||||    
T  32297455 tggtcatttaagtcataaaacatgtgcatcatcatcatatttttatcaaattcgattaaaaagtgtttatgtggagatttaat-ttaagttggtatgtcc 32297357  T
Q  193 aaattca 199  Q
     ||||||    
T  32297356 gaattca 32297350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 32450494 - 32450394
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattc 198  Q
    ||||||||| ||||||  ||||||||||||||| |||||||||| |   | |||| || ||||||| || |||||||||||||||| ||||| |||||||    
T  32450494 tttaagtcagaaaatacatgcatcattatcttattttcatcaaactcggttaaaaggtatttatgtagacgtttaatgttaagttgatttgttcaaattc 32450395  T
Q  199 a 199  Q
    |    
T  32450394 a 32450394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 184
Target Start/End: Original strand, 30053681 - 30053770
Alignment:
Q  95 gtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    ||||||||||||||||||||| |||| ||||||  || || ||||||| | ||| |||||||| |||||||||||| || || |||||||    
T  30053681 gtcctttaagtcataaaatatatgcaccattattatatttccatcaaactcaattaaaaagtgcttatgtggatgtgtattgctaagttg 30053770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 277
Target Start/End: Original strand, 32438047 - 32438174
Alignment:
Q  150 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaa 249  Q
    |||| ||||||||||| ||||||||||||||||||||     |||||| | | ||||||||| || || |||||||||| ||||||  ||||  ||  ||    
T  32438047 aaaaggtgtttatgtgcatgtttaatgttaagttggtcaactcaaatttactactctcaaaactagagtttataggtgtattattcactcttcgtttgaa 32438146  T
Q  250 acaaaattaaccgattacttgatttata 277  Q
    |||||||| |  ||||||||||||||||    
T  32438147 acaaaattgattgattacttgatttata 32438174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 199
Target Start/End: Complemental strand, 33407441 - 33407327
Alignment:
Q  85 ttacaaaatggtcctttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaagttg 184  Q
    |||||||  |||| || |||| ||||||||| ||||||||||||||| ||| || ||| |   | ||||| |||||| || || ||||||||||||||||    
T  33407441 ttacaaatcggtctttcaagttataaaatatatgcatcattatcttatttttataaaactttgtaaaaaaatgtttaagttgacgtttaatgttaagttg 33407342  T
Q  185 gtttgtccaaattca 199  Q
     | || |||||||||    
T  33407341 atatgcccaaattca 33407327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 180
Target Start/End: Original strand, 19048495 - 19048576
Alignment:
Q  99 tttaagtcataaaatatttgcatcattatcttaatttcatcaaattaaatcaaaaagtgtttatgtggatgtttaatgttaa 180  Q
    ||||||| | ||||||| | ||| || || ||| |||||||||| | ||| ||||||||||||||| || ||||||||||||    
T  19048495 tttaagttagaaaatatctacataatgattttattttcatcaaactcaattaaaaagtgtttatgtcgacgtttaatgttaa 19048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 279
Target Start/End: Original strand, 39143 - 39272
Alignment:
Q  150 aaaaagtgtttatgtggatgtttaatgttaagttggtttgtccaaattcattgctctcaaaattaaagcttataggtgtgttattcgatcttgattcaaa 249  Q
    ||||| || ||||||| ||||||||||||||||||||  || ||| |||| ||| ||||||||||    | ||||||||  |||||  |||| |||  ||    
T  39143 aaaaactgcttatgtgcatgtttaatgttaagttggtgggttcaagttcagtgccctcaaaattagtattcataggtgtaatattcagtcttaatttgaa 39242  T
Q  250 acaaaattaaccgattacttgatttataat 279  Q
    || |||| || | |||||||||||||||||    
T  39243 acgaaatcaatcaattacttgatttataat 39272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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