View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18965_low_14 (Length: 259)
Name: NF18965_low_14
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 243
Target Start/End: Original strand, 28933144 - 28933382
Alignment:
| Q |
5 |
atttaggtgaaaagacatcctgtaaagaaaaagtttgatgaggtatgttctactcctgaagtttttattctactccaacaattctatttctacctgcatt |
104 |
Q |
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| T |
28933144 |
atttaggtgaaaagacatcctgtaaagaaaaagtttgatgaggtatgttctactcctgaagtttttattctactccaacaattctatttctacctgcatt |
28933243 |
T |
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| Q |
105 |
ttgttctatattatgtattctgcaggtttcctcaggccccataaaaaatattggtgttgtgtgctaattcatgattgtggatagaaaaagtttattttgt |
204 |
Q |
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| T |
28933244 |
ttgttctatattatgtattctgcaggtttcctcaggccccataaaaaatattggtgttgtgtgctaattcatgattgtggatagaaaatttttattttgt |
28933343 |
T |
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| Q |
205 |
catctaactttcgaatcaccttttattggcctggtattt |
243 |
Q |
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| T |
28933344 |
catctaactttcgaatcaccttttattggcctggtattt |
28933382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 243
Target Start/End: Original strand, 10187513 - 10187666
Alignment:
| Q |
91 |
tttctacctgcattttgttctatattatgtattctgcaggtttcctcaggccccataaaaaatattggtgt--tgtgtgctaattcatgattgtggatag |
188 |
Q |
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| T |
10187513 |
tttctgcctgcattttgttctttattaagcattctgcatgttgcctcggggcccttaaaaaatgttggtgttctgtgcgctaatccatggtcgtggttag |
10187612 |
T |
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| Q |
189 |
aaaaagtttattttgtcatctaactttcgaatcaccttttattggcctggtattt |
243 |
Q |
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| T |
10187613 |
agaaagttaatttt-tcgtctatcttctgaatcaccttttattggcttggtattt |
10187666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 44 - 163
Target Start/End: Complemental strand, 35120849 - 35120730
Alignment:
| Q |
44 |
gaggtatgttctactcctgaagtttttattctactccaacaattctat-ttctacctgcattttgttctatattatgtattctgcaggtttcctcaggcc |
142 |
Q |
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||||||| |||||||||||| |||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||| |||| ||| ||||| || |
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| T |
35120849 |
gaggtatattctactcctgatgtttttattctactgtaacaattctttcttctacatgcattttgttctatattatgtatt-tgcatgttgtctcagacc |
35120751 |
T |
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| Q |
143 |
ccataaaaaatattggtgttg |
163 |
Q |
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| T |
35120750 |
ccttaaaaaatgttggtgttg |
35120730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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