View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18965_low_15 (Length: 252)

Name: NF18965_low_15
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18965_low_15
NF18965_low_15
[»] chr3 (6 HSPs)
chr3 (69-182)||(12365098-12365212)
chr3 (18-68)||(46829040-46829090)
chr3 (18-59)||(46829111-46829152)
chr3 (209-243)||(12365037-12365071)
chr3 (19-53)||(40905808-40905842)
chr3 (18-54)||(32221539-32221575)
[»] chr2 (12 HSPs)
chr2 (18-68)||(31469062-31469112)
chr2 (18-62)||(10459263-10459307)
chr2 (18-61)||(31469140-31469183)
chr2 (19-62)||(29291134-29291177)
chr2 (18-62)||(17437195-17437239)
chr2 (19-59)||(33829389-33829429)
chr2 (18-57)||(16180504-16180543)
chr2 (20-53)||(7932749-7932782)
chr2 (18-62)||(2949039-2949083)
chr2 (22-62)||(10459339-10459379)
chr2 (21-61)||(16564376-16564416)
chr2 (18-62)||(41374598-41374642)
[»] chr1 (5 HSPs)
chr1 (18-68)||(3739883-3739933)
chr1 (18-62)||(3739811-3739855)
chr1 (18-60)||(29855127-29855169)
chr1 (18-67)||(19758340-19758389)
chr1 (18-56)||(35310321-35310359)
[»] chr5 (7 HSPs)
chr5 (18-67)||(39030555-39030604)
chr5 (18-62)||(34252714-34252758)
chr5 (18-62)||(39030632-39030676)
chr5 (18-61)||(33669996-33670039)
chr5 (18-62)||(9956567-9956611)
chr5 (18-54)||(42324949-42324985)
chr5 (18-62)||(38958058-38958102)
[»] chr4 (7 HSPs)
chr4 (19-59)||(55827311-55827351)
chr4 (19-62)||(55762934-55762977)
chr4 (18-61)||(2734177-2734220)
chr4 (18-63)||(21606058-21606103)
chr4 (23-59)||(54009984-54010020)
chr4 (18-62)||(12276817-12276861)
chr4 (18-62)||(18508886-18508930)
[»] chr7 (6 HSPs)
chr7 (18-63)||(6803303-6803348)
chr7 (19-58)||(5026141-5026180)
chr7 (18-62)||(16866398-16866442)
chr7 (18-49)||(16866470-16866501)
chr7 (22-62)||(1554908-1554948)
chr7 (18-62)||(27147594-27147638)
[»] chr8 (3 HSPs)
chr8 (18-61)||(35901104-35901147)
chr8 (18-57)||(7974855-7974894)
chr8 (22-62)||(11114309-11114349)
[»] chr6 (6 HSPs)
chr6 (18-56)||(31323817-31323855)
chr6 (18-58)||(14446697-14446737)
chr6 (19-62)||(7343311-7343354)
chr6 (18-59)||(31522677-31522717)
chr6 (19-55)||(7549854-7549890)
chr6 (22-62)||(9675759-9675799)


Alignment Details
Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 69 - 182
Target Start/End: Complemental strand, 12365212 - 12365098
Alignment:
Q  69 aatggtggcacaccaaatataccaaagatgattttcagtaaatctagcatttggattt-acatgaatggtaaataaaaaggcgtatcgggaagaaaagaa 167  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||      
T  12365212 aatggcggcacaccaaatataccaaagatgattttcagtaaatttagcatttggatttaacatgaatggtaaataaaaaggtgtatcgggaagaaaaggg 12365113  T
Q  168 gaattttctggaata 182  Q
    || | ||||||||||    
T  12365112 gattgttctggaata 12365098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 46829090 - 46829040
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggagtagtat 68  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| ||||||    
T  46829090 cattgacttttgttgaccaatttttgcttatattttaggacggaatagtat 46829040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 46829111 - 46829152
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacg 59  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  46829111 cattaacttttgttgaccaatttttgcttatattttaggacg 46829152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 209 - 243
Target Start/End: Complemental strand, 12365071 - 12365037
Alignment:
Q  209 cataaagtaaaaaatgttgtttctggcatattctt 243  Q
    |||||||||||||| ||||||||||||||||||||    
T  12365071 cataaagtaaaaaaggttgtttctggcatattctt 12365037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 40905842 - 40905808
Alignment:
Q  19 attaacttttgttgaccaatttttgcttatatttt 53  Q
    ||||||||||||||||||||||||||||| |||||    
T  40905842 attaacttttgttgaccaatttttgcttacatttt 40905808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 32221539 - 32221575
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttg 54  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  32221539 cattaacttttgttgactaatttttgcttacattttg 32221575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 31469112 - 31469062
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggagtagtat 68  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31469112 cattaacttttgttgaccaatttttgcttatattttgggacggagtagtat 31469062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 10459307 - 10459263
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    |||||||||||||||||||||||||||||||||||||||| ||||    
T  10459307 cattaacttttgttgaccaatttttgcttatattttgggaaggag 10459263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 31469140 - 31469183
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacgga 61  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  31469140 cattaactttcgttgaccaatttttgcttatattttgggacgga 31469183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 29291134 - 29291177
Alignment:
Q  19 attaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    |||||||||| |||||||||||||||||| ||||||||||||||    
T  29291134 attaacttttattgaccaatttttgcttacattttgggacggag 29291177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 17437195 - 17437239
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    |||||| |||||||||| |||||||| ||||||||||||||||||    
T  17437195 cattaatttttgttgacaaatttttgtttatattttgggacggag 17437239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 33829429 - 33829389
Alignment:
Q  19 attaacttttgttgaccaatttttgcttatattttgggacg 59  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  33829429 attaatttttgttgaccaatttttgtttatattttgggacg 33829389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 16180504 - 16180543
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttggga 57  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  16180504 cattaacttttgttgaccaaattttacttatattttggga 16180543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 7932782 - 7932749
Alignment:
Q  20 ttaacttttgttgaccaatttttgcttatatttt 53  Q
    ||||||||||||||| ||||||||||||||||||    
T  7932782 ttaacttttgttgactaatttttgcttatatttt 7932749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 2949083 - 2949039
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    ||||| |||||||| ||||||||||||||| |||||| |||||||    
T  2949083 cattagcttttgttaaccaatttttgcttacattttgagacggag 2949039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 10459339 - 10459379
Alignment:
Q  22 aacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    ||||| ||||||||||| |||||||| ||||||||||||||    
T  10459339 aacttatgttgaccaatctttgcttacattttgggacggag 10459379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 16564416 - 16564376
Alignment:
Q  21 taacttttgttgaccaatttttgcttatattttgggacgga 61  Q
    |||| ||||| |||||||||||||||||||||| |||||||    
T  16564416 taacgtttgtagaccaatttttgcttatattttaggacgga 16564376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 41374598 - 41374642
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    |||||||||| |||||| ||||||| ||||||||||| |||||||    
T  41374598 cattaactttcgttgactaatttttacttatattttgagacggag 41374642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 3739883 - 3739933
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggagtagtat 68  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3739883 cattaacttttgttgaccaatttttgcttatattttaggacggagtagtat 3739933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 3739855 - 3739811
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  3739855 cattaactttcgttgaccaatttttgcttatattttgggacggag 3739811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 29855127 - 29855169
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacgg 60  Q
    |||||||||||||||| ||||||||||||||||||| ||||||    
T  29855127 cattaacttttgttgatcaatttttgcttatattttaggacgg 29855169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 19758340 - 19758389
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggagtagta 67  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||| ||||    
T  19758340 cattaacttttgttgaccaatttttacttatattttatgacggagaagta 19758389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 35310321 - 35310359
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttggg 56  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  35310321 cattaatttttgttgaccaatttttacttatattttggg 35310359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 39030604 - 39030555
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggagtagta 67  Q
    |||||||||||||||||||||||||||||||||||| | |||||||||||    
T  39030604 cattaacttttgttgaccaatttttgcttatattttagaacggagtagta 39030555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 34252758 - 34252714
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  34252758 cattaacttttgttgaccaatttttgcttacattttgggacggag 34252714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 39030632 - 39030676
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||    
T  39030632 cattaacttttgttgactaatttttgcttatattttgggatggag 39030676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 33669996 - 33670039
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacgga 61  Q
    ||||||||||| |||||||||||||||||| |||||||||||||    
T  33669996 cattaactttttttgaccaatttttgcttacattttgggacgga 33670039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 9956567 - 9956611
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    |||||||||||||| |||||||||| |||| ||||||||||||||    
T  9956567 cattaacttttgttaaccaatttttacttacattttgggacggag 9956611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 42324949 - 42324985
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttg 54  Q
    ||||||||||||||||||||||||| |||||||||||    
T  42324949 cattaacttttgttgaccaatttttacttatattttg 42324985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 38958102 - 38958058
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    |||||||||||||| | |||||||| |||||||||||| ||||||    
T  38958102 cattaacttttgttaatcaatttttacttatattttggaacggag 38958058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 55827311 - 55827351
Alignment:
Q  19 attaacttttgttgaccaatttttgcttatattttgggacg 59  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  55827311 attaacttttgttgaccaatttttgcttatattttgggacg 55827351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 55762934 - 55762977
Alignment:
Q  19 attaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  55762934 attaacttttgttgaccaatttttgtttatattttgggacggag 55762977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 2734220 - 2734177
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacgga 61  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||    
T  2734220 cattaacttttgttgactaatttttacttatattttgggacgga 2734177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 21606058 - 21606103
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggagt 63  Q
    |||||||||||| ||||||  |||||||||||||||||||||||||    
T  21606058 cattaacttttgctgaccacattttgcttatattttgggacggagt 21606103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 54010020 - 54009984
Alignment:
Q  23 acttttgttgaccaatttttgcttatattttgggacg 59  Q
    |||| ||||||||||||||||||||||||||||||||    
T  54010020 acttatgttgaccaatttttgcttatattttgggacg 54009984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 12276861 - 12276817
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    |||||||||||| |||||||| ||| |||||||||| ||||||||    
T  12276861 cattaacttttgctgaccaatctttacttatattttaggacggag 12276817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 18508886 - 18508930
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    |||||||||||||||||||||||| ||||  ||||||||| ||||    
T  18508886 cattaacttttgttgaccaattttcgcttccattttgggatggag 18508930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 6803348 - 6803303
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggagt 63  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||    
T  6803348 cattaacttttgttgaccaaattttgcttatattttgggacagagt 6803303  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 5026180 - 5026141
Alignment:
Q  19 attaacttttgttgaccaatttttgcttatattttgggac 58  Q
    ||||||||||||| ||||||||||||||||||||||||||    
T  5026180 attaacttttgttaaccaatttttgcttatattttgggac 5026141  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 16866442 - 16866398
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    ||||||||||| |||| ||||||||||||||||||||||| ||||    
T  16866442 cattaacttttattgatcaatttttgcttatattttgggatggag 16866398  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 16866470 - 16866501
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttata 49  Q
    ||||||||||||||||||||||||||||||||    
T  16866470 cattaacttttgttgaccaatttttgcttata 16866501  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 1554908 - 1554948
Alignment:
Q  22 aacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    ||||||| |||||||||||||| ||||||||| ||||||||    
T  1554908 aacttttattgaccaatttttgtttatattttaggacggag 1554948  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 27147638 - 27147594
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    ||||||||||||||||| ||||||| |||||||||| | ||||||    
T  27147638 cattaacttttgttgactaatttttacttatattttagaacggag 27147594  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 35901104 - 35901147
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacgga 61  Q
    |||||||||||||||||| ||||||||||||||||| |||||||    
T  35901104 cattaacttttgttgacctatttttgcttatattttaggacgga 35901147  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 7974855 - 7974894
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttggga 57  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  7974855 cattaacttttattgaccaatttttgtttatattttggga 7974894  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Original strand, 11114309 - 11114349
Alignment:
Q  22 aacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    ||||| |||||| |||||||| |||||||||||||||||||    
T  11114309 aacttatgttgatcaatttttacttatattttgggacggag 11114349  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 31323855 - 31323817
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttggg 56  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  31323855 cattaacttttgttgaccaatttttgcttacattttggg 31323817  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 14446737 - 14446697
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggac 58  Q
    |||||||||||||||||||| ||||||||| ||||||||||    
T  14446737 cattaacttttgttgaccaacttttgcttacattttgggac 14446697  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 7343311 - 7343354
Alignment:
Q  19 attaacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||    
T  7343311 attaacttttgttgatcaatttttacttatattttaggacggag 7343354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 31522677 - 31522717
Alignment:
Q  18 cattaacttttgttgaccaatttttgcttatattttgggacg 59  Q
    |||||||||||||||||||| ||||||||| |||||||||||    
T  31522677 cattaacttttgttgaccaa-ttttgcttacattttgggacg 31522717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 7549854 - 7549890
Alignment:
Q  19 attaacttttgttgaccaatttttgcttatattttgg 55  Q
    ||||||||||||  |||||||||||||||||||||||    
T  7549854 attaacttttgtacaccaatttttgcttatattttgg 7549890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 9675799 - 9675759
Alignment:
Q  22 aacttttgttgaccaatttttgcttatattttgggacggag 62  Q
    ||||| |||||||||||||||||||| |||||| |||||||    
T  9675799 aacttatgttgaccaatttttgcttacattttgagacggag 9675759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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