View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18965_low_18 (Length: 249)
Name: NF18965_low_18
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 3569392 - 3569625
Alignment:
| Q |
4 |
tttttcttaaaccttggttttgttat---ctttaaattagctagtgcttattgaatatcaatatcgatttttgtataattcgtaacaagcggacctagcc |
100 |
Q |
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| T |
3569392 |
tttttcttaaaccttggttttgttataatctttaaattagctagtgcttattgaatatcaat------ttttgtataattcgtaacaagcggacctagcc |
3569485 |
T |
|
| Q |
101 |
agtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggttttgtgaatccattggaattttgctgtggaagttactatggttaccacata |
200 |
Q |
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| T |
3569486 |
agtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggtcttgtgaatccattggaattttgctgtggaagttactatggttaccacata |
3569585 |
T |
|
| Q |
201 |
aattgcttgttgaggaggatgatttcaacaatatcctttg |
240 |
Q |
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| T |
3569586 |
aattgcttgttgaggaggatgatttcaacaatatcctttg |
3569625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 3577114 - 3577319
Alignment:
| Q |
4 |
tttttcttaaaccttggtttt-gttatctttaaattagctagtgcttattgaatatcaatatcgatttttgtataattcgtaacaagcggacctagccag |
102 |
Q |
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| T |
3577114 |
tttttcttaatccttggtttttgttatcttcaacttagctagtgcttattgaatatcacaatcattttttgtataactcgtgacaaacggacctagccag |
3577213 |
T |
|
| Q |
103 |
tgcacaattaagttttaatttttaatcttgcatgatttgtggtaggttttgtgaatccattggaattttgctgtggaagttactatggttaccacataaa |
202 |
Q |
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| T |
3577214 |
tgcacagttaagtgttaatttttattcttgcacgatttgtggctggttttgtaaatccattgaaattttgctgtggaagttactatggttaccacataaa |
3577313 |
T |
|
| Q |
203 |
ttgctt |
208 |
Q |
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|||||| |
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| T |
3577314 |
ttgctt |
3577319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 4 - 208
Target Start/End: Original strand, 3591455 - 3591659
Alignment:
| Q |
4 |
tttttcttaaaccttggtttt-gttatctttaaattagctagtgcttattgaatatcaatatcgatttttgtataattcgtaacaagcggacctagccag |
102 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |||| ||||||||||||| |
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| T |
3591455 |
tttttcttaaaccttggtttttgctatctttaaattagctagtgcttattgaatatcacaatcattttttgtataactcgtgacaaacggacctagccag |
3591554 |
T |
|
| Q |
103 |
tgcacaattaagttttaatttttaatcttgcatgatttgtggtaggttttgtgaatccattggaattttgctgtggaagttactatggttaccacataaa |
202 |
Q |
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| T |
3591555 |
tgcacagttaagtgttaatttttattcttgcacgatttgtggcaggttttgtgaatccattgaaatatttctgtggaaattactatggtta-cacataaa |
3591653 |
T |
|
| Q |
203 |
ttgctt |
208 |
Q |
| |
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|||||| |
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| T |
3591654 |
ttgctt |
3591659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 3602227 - 3602310
Alignment:
| Q |
102 |
gtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggttttgtgaatccattggaattttgctgtggaagttac |
185 |
Q |
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| T |
3602227 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttgtgaatccattggaattttgttgtggaagttac |
3602310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 185
Target Start/End: Original strand, 14341110 - 14341193
Alignment:
| Q |
102 |
gtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggttttgtgaatccattggaattttgctgtggaagttac |
185 |
Q |
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| T |
14341110 |
gtgcacaattaagttttaacttttatgcttgcatgatttgtggcaggttttatgaatccattggaattttgttgtggaagttac |
14341193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 96 - 205
Target Start/End: Original strand, 1409811 - 1409916
Alignment:
| Q |
96 |
tagccagtgcacaattaagttttaatttttaatcttgcatgatttgtggtaggttttgtgaatccattggaattttgctgtggaagttactatggttacc |
195 |
Q |
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||||||||||||||||| ||||||| | | | ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1409811 |
tagccagtgcacaattaggttttaactctca----tgcttgatttgtggcaggttttgtgaatccattggaattttgctgtggaagttactatggttacc |
1409906 |
T |
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| Q |
196 |
acataaattg |
205 |
Q |
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|||||||||| |
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| T |
1409907 |
acataaattg |
1409916 |
T |
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