View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18965_low_21 (Length: 233)
Name: NF18965_low_21
Description: NF18965
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18965_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 3569136 - 3569353
Alignment:
| Q |
12 |
aatagaaacttatcagcaacgcaaggagccaaggtaatgttcaagtctccaaaagcacacatcattgactagaatacaatgttttggtcaaagttttaaa |
111 |
Q |
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| T |
3569136 |
aatagaaacttatcagcaacgcaaggagccagggtaatgttcaagtctccaaaagcacacatcattgactagaatgcaatgttttggtcaaggttttaaa |
3569235 |
T |
|
| Q |
112 |
ttgcgat-caatcatggtcatgtttgcatctgaatctttgttattgccgaaaatcgcacacaactgtgcttgatgcggcctcaagcatgttcgtgttgtg |
210 |
Q |
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| T |
3569236 |
ttgcgatccaatcatggtcatgtttgcatctgaatctttgttattgccgaaaatcgcacacaactgtgcttgatgtggcctcaacggtgttcgcgttgtg |
3569335 |
T |
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| Q |
211 |
gtcacaaagacataaaaa |
228 |
Q |
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|||||||||||||||||| |
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| T |
3569336 |
gtcacaaagacataaaaa |
3569353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 3591199 - 3591418
Alignment:
| Q |
12 |
aatagaaacttatcagcaacgcaaggag--ccaaggtaatgttcaagtctccaaaagcacacatcattgactagaatacaatgttttggtcaaagtttta |
109 |
Q |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| |||||| || ||||| |||||| |
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| T |
3591199 |
aatataaacttatcagcaacgcaaggaataccaaggtaatgttcaagtctccaaaagaatacatcattgactagaatgcaatgtatttgtcaaggtttta |
3591298 |
T |
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| Q |
110 |
aattgcgatc-aatcatggtcatgtttgcatctgaatctttgttattgccgaaaatcgcacacaactgtgcttgatgcggcctcaagcatgttcgtgttg |
208 |
Q |
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| T |
3591299 |
aattgtgatccaatcatggtcatgtttgcatctcaatctttggtattgccgataatcgcactcaactgttcttgatgtagcctcaaccgtgttcgcgttg |
3591398 |
T |
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| Q |
209 |
tggtcacaaagacataaaaa |
228 |
Q |
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||||||||||||||| |||| |
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| T |
3591399 |
tggtcacaaagacatcaaaa |
3591418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 3602148 - 3602184
Alignment:
| Q |
19 |
acttatcagcaacgcaaggagccaaggtaatgttcaa |
55 |
Q |
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|||||||||||| ||||||| |||||||||||||||| |
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| T |
3602148 |
acttatcagcaatgcaaggaaccaaggtaatgttcaa |
3602184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 1409544 - 1409653
Alignment:
| Q |
12 |
aatagaaacttatcagcaacgcaaggagccaaggtaatgttcaagtctccaaaagcacacatcattgactagaatacaatgttttggtcaaagttttaaa |
111 |
Q |
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|||| |||||||| ||||| |||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||| ||| ||||| | |
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| T |
1409544 |
aatataaacttattagcaatgcaaagagccaaggtaatgttcaagactcaaaaagcacacatcattgactagaatataatgtcttggccaaggttttgta |
1409643 |
T |
|
| Q |
112 |
ttgcgatcaa |
121 |
Q |
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|||||||||| |
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| T |
1409644 |
ttgcgatcaa |
1409653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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